Cluster: MGYG000004151_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004151
- CGC Family ID: CGCFAM_03103
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004151_58 | MGYG000004151_58_13 | 16616 | 17752 | + | GT4 |
| CAZyme | MGYG000004151_58 | MGYG000004151_58_14 | 17778 | 18734 | + | GT4 |
| CAZyme | MGYG000004151_58 | MGYG000004151_58_15 | 18785 | 19651 | + | GT2 |
| pfam | MGYG000004151_58 | MGYG000004151_58_16 | 19663 | 20892 | + | Wzy_C |
| pfam | MGYG000004151_58 | MGYG000004151_58_17 | 20879 | 21526 | - | Kdo |
| TC | MGYG000004151_58 | MGYG000004151_58_18 | 21626 | 23446 | + | 3.A.1.106.1 |
Gene ID: MGYG000004151_58_13
Type: CAZyme
Location: 16616 - 17752 (+)
Type: CAZyme
Location: 16616 - 17752 (+)
Gene ID: MGYG000004151_58_14
Type: CAZyme
Location: 17778 - 18734 (+)
Type: CAZyme
Location: 17778 - 18734 (+)
Gene ID: MGYG000004151_58_15
Type: CAZyme
Location: 18785 - 19651 (+)
Type: CAZyme
Location: 18785 - 19651 (+)
Gene ID: MGYG000004151_58_16
Type: pfam
Location: 19663 - 20892 (+)
Type: pfam
Location: 19663 - 20892 (+)
Gene ID: MGYG000004151_58_17
Type: pfam
Location: 20879 - 21526 (-)
Type: pfam
Location: 20879 - 21526 (-)
Gene ID: MGYG000004151_58_18
Type: TC
Location: 21626 - 23446 (+)
Type: TC
Location: 21626 - 23446 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas citronellolis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.