Cluster: MGYG000004151_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004151
- CGC Family ID: CGCFAM_00294
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004151_38 | MGYG000004151_38_19 | 24837 | 27320 | - | 1.B.11.3.9 |
| pfam | MGYG000004151_38 | MGYG000004151_38_20 | 27479 | 28198 | - | PapD_N | PapD_C |
| pfam | MGYG000004151_38 | MGYG000004151_38_21 | 28248 | 28838 | - | Fimbrial |
| TC | MGYG000004151_38 | MGYG000004151_38_22 | 29730 | 32132 | + | 1.B.55.1.1 |
| CAZyme | MGYG000004151_38 | MGYG000004151_38_23 | 32142 | 34145 | + | CE4 | GH153 |
| CAZyme | MGYG000004151_38 | MGYG000004151_38_24 | 34142 | 35467 | + | GT2 |
Gene ID: MGYG000004151_38_19
Type: TC
Location: 24837 - 27320 (-)
Type: TC
Location: 24837 - 27320 (-)
Gene ID: MGYG000004151_38_20
Type: pfam
Location: 27479 - 28198 (-)
Type: pfam
Location: 27479 - 28198 (-)
Gene ID: MGYG000004151_38_21
Type: pfam
Location: 28248 - 28838 (-)
Type: pfam
Location: 28248 - 28838 (-)
Gene ID: MGYG000004151_38_22
Type: TC
Location: 29730 - 32132 (+)
Type: TC
Location: 29730 - 32132 (+)
Gene ID: MGYG000004151_38_23
Type: CAZyme
Location: 32142 - 34145 (+)
Type: CAZyme
Location: 32142 - 34145 (+)
Gene ID: MGYG000004151_38_24
Type: CAZyme
Location: 34142 - 35467 (+)
Type: CAZyme
Location: 34142 - 35467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas citronellolis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.