Cluster: MGYG000004142_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: MGYG000004142
- CGC Family ID: CGCFAM_00010
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004142_3 | MGYG000004142_3_100 | 113157 | 114479 | + | 3.A.1.1.45 |
| TC | MGYG000004142_3 | MGYG000004142_3_101 | 114680 | 115531 | + | 3.A.1.1.45 |
| TC | MGYG000004142_3 | MGYG000004142_3_102 | 115531 | 116373 | + | 3.A.1.1.45 |
| TF | MGYG000004142_3 | MGYG000004142_3_103 | 116472 | 117497 | + | LacI |
| TC | MGYG000004142_3 | MGYG000004142_3_104 | 117512 | 118603 | + | 3.A.1.1.22 |
| STP | MGYG000004142_3 | MGYG000004142_3_105 | 118618 | 118842 | + | PTS-HPr |
| CAZyme | MGYG000004142_3 | MGYG000004142_3_106 | 118858 | 120342 | + | GH77 |
Gene ID: MGYG000004142_3_100
Type: TC
Location: 113157 - 114479 (+)
Type: TC
Location: 113157 - 114479 (+)
Gene ID: MGYG000004142_3_101
Type: TC
Location: 114680 - 115531 (+)
Type: TC
Location: 114680 - 115531 (+)
Gene ID: MGYG000004142_3_102
Type: TC
Location: 115531 - 116373 (+)
Type: TC
Location: 115531 - 116373 (+)
Gene ID: MGYG000004142_3_103
Type: TF
Location: 116472 - 117497 (+)
Type: TF
Location: 116472 - 117497 (+)
Gene ID: MGYG000004142_3_104
Type: TC
Location: 117512 - 118603 (+)
Type: TC
Location: 117512 - 118603 (+)
Gene ID: MGYG000004142_3_105
Type: STP
Location: 118618 - 118842 (+)
Type: STP
Location: 118618 - 118842 (+)
Gene ID: MGYG000004142_3_106
Type: CAZyme
Location: 118858 - 120342 (+)
Type: CAZyme
Location: 118858 - 120342 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vermiculatibacterium
Species
Vermiculatibacterium sp900169975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.