Cluster: MGYG000004132_CGC35
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000004132
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004132_30 | MGYG000004132_30_2 | 2359 | 5586 | - | GH2 |
| TF | MGYG000004132_30 | MGYG000004132_30_3 | 5803 | 6651 | + | HTH_AraC | HTH_AraC |
| CAZyme | MGYG000004132_30 | MGYG000004132_30_4 | 6648 | 10361 | - | CBM35 |
| CAZyme | MGYG000004132_30 | MGYG000004132_30_5 | 10368 | 14141 | - | CBM35 | GH39 |
| CAZyme | MGYG000004132_30 | MGYG000004132_30_6 | 14208 | 16187 | - | GH31_4 |
| TF | MGYG000004132_30 | MGYG000004132_30_7 | 16344 | 17234 | + | HTH_AraC | HTH_AraC |
| pfam | MGYG000004132_30 | MGYG000004132_30_8 | 17242 | 18084 | - | AP_endonuc_2 |
| CAZyme | MGYG000004132_30 | MGYG000004132_30_9 | 18118 | 19281 | - | GH177 |
| CAZyme | MGYG000004132_30 | MGYG000004132_30_10 | 19322 | 22720 | - | GH115 |
| TF | MGYG000004132_30 | MGYG000004132_30_11 | 22893 | 23723 | + | HTH_AraC | HTH_AraC |
| TC | MGYG000004132_30 | MGYG000004132_30_12 | 23734 | 24723 | - | 8.A.5.1.3 |
| TC | MGYG000004132_30 | MGYG000004132_30_13 | 24739 | 25581 | - | 1.A.16.2.1 |
Gene ID: MGYG000004132_30_2
Type: CAZyme
Location: 2359 - 5586 (-)
Type: CAZyme
Location: 2359 - 5586 (-)
Gene ID: MGYG000004132_30_3
Type: TF
Location: 5803 - 6651 (+)
Type: TF
Location: 5803 - 6651 (+)
Gene ID: MGYG000004132_30_4
Type: CAZyme
Location: 6648 - 10361 (-)
Type: CAZyme
Location: 6648 - 10361 (-)
Gene ID: MGYG000004132_30_5
Type: CAZyme
Location: 10368 - 14141 (-)
Type: CAZyme
Location: 10368 - 14141 (-)
Gene ID: MGYG000004132_30_6
Type: CAZyme
Location: 14208 - 16187 (-)
Type: CAZyme
Location: 14208 - 16187 (-)
Gene ID: MGYG000004132_30_7
Type: TF
Location: 16344 - 17234 (+)
Type: TF
Location: 16344 - 17234 (+)
Gene ID: MGYG000004132_30_8
Type: pfam
Location: 17242 - 18084 (-)
Type: pfam
Location: 17242 - 18084 (-)
Gene ID: MGYG000004132_30_9
Type: CAZyme
Location: 18118 - 19281 (-)
Type: CAZyme
Location: 18118 - 19281 (-)
Gene ID: MGYG000004132_30_10
Type: CAZyme
Location: 19322 - 22720 (-)
Type: CAZyme
Location: 19322 - 22720 (-)
Gene ID: MGYG000004132_30_11
Type: TF
Location: 22893 - 23723 (+)
Type: TF
Location: 22893 - 23723 (+)
Gene ID: MGYG000004132_30_12
Type: TC
Location: 23734 - 24723 (-)
Type: TC
Location: 23734 - 24723 (-)
Gene ID: MGYG000004132_30_13
Type: TC
Location: 24739 - 25581 (-)
Type: TC
Location: 24739 - 25581 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
V9D3004
Species
V9D3004 sp900760345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.