Cluster: MGYG000004097_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004097
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004097_1 | MGYG000004097_1_57 | 60483 | 61925 | + | 3.A.1.8.1 |
| TC | MGYG000004097_1 | MGYG000004097_1_58 | 61929 | 62999 | + | 3.A.1.1.3 |
| pfam | MGYG000004097_1 | MGYG000004097_1_59 | 63429 | 64712 | + | HGD-D |
| TC | MGYG000004097_1 | MGYG000004097_1_60 | 64897 | 66507 | + | 3.A.1.5.11 |
| TC | MGYG000004097_1 | MGYG000004097_1_61 | 66596 | 67549 | + | 3.A.1.5.39 |
| TC | MGYG000004097_1 | MGYG000004097_1_62 | 67546 | 68376 | + | 3.A.1.5.39 |
| TC | MGYG000004097_1 | MGYG000004097_1_63 | 68380 | 69375 | + | 3.A.1.5.37 |
| TC | MGYG000004097_1 | MGYG000004097_1_64 | 69365 | 70150 | + | 3.A.1.5.36 |
| pfam | MGYG000004097_1 | MGYG000004097_1_65 | 70227 | 71390 | + | HGD-D |
| pfam | MGYG000004097_1 | MGYG000004097_1_66 | 71546 | 72310 | + | BcrAD_BadFG |
| CAZyme | MGYG000004097_1 | MGYG000004097_1_67 | 72323 | 73540 | + | GT4 |
Gene ID: MGYG000004097_1_57
Type: TC
Location: 60483 - 61925 (+)
Type: TC
Location: 60483 - 61925 (+)
Gene ID: MGYG000004097_1_58
Type: TC
Location: 61929 - 62999 (+)
Type: TC
Location: 61929 - 62999 (+)
Gene ID: MGYG000004097_1_59
Type: pfam
Location: 63429 - 64712 (+)
Type: pfam
Location: 63429 - 64712 (+)
Gene ID: MGYG000004097_1_60
Type: TC
Location: 64897 - 66507 (+)
Type: TC
Location: 64897 - 66507 (+)
Gene ID: MGYG000004097_1_61
Type: TC
Location: 66596 - 67549 (+)
Type: TC
Location: 66596 - 67549 (+)
Gene ID: MGYG000004097_1_62
Type: TC
Location: 67546 - 68376 (+)
Type: TC
Location: 67546 - 68376 (+)
Gene ID: MGYG000004097_1_63
Type: TC
Location: 68380 - 69375 (+)
Type: TC
Location: 68380 - 69375 (+)
Gene ID: MGYG000004097_1_64
Type: TC
Location: 69365 - 70150 (+)
Type: TC
Location: 69365 - 70150 (+)
Gene ID: MGYG000004097_1_65
Type: pfam
Location: 70227 - 71390 (+)
Type: pfam
Location: 70227 - 71390 (+)
Gene ID: MGYG000004097_1_66
Type: pfam
Location: 71546 - 72310 (+)
Type: pfam
Location: 71546 - 72310 (+)
Gene ID: MGYG000004097_1_67
Type: CAZyme
Location: 72323 - 73540 (+)
Type: CAZyme
Location: 72323 - 73540 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902492235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004097_1_60 | vegan > omnivore | 3.37276 | 0.01144 |
| MGYG000004097_1_61 | vegan > omnivore | 2.82444 | 0.01144 |
| MGYG000004097_1_62 | vegan > omnivore | 3.03544 | 0.01144 |
| MGYG000004097_1_64 | vegan > omnivore | 2.93287 | 0.01144 |
| MGYG000004097_1_67 | vegan > omnivore | 1.49092 | 0.01144 |