Cluster: MGYG000004097_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004097
- CGC Family ID: CGCFAM_00019
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004097_7 | MGYG000004097_7_16 | 16937 | 18319 | - | GH4 |
| TC | MGYG000004097_7 | MGYG000004097_7_17 | 18323 | 19939 | - | 4.A.1.1.8 |
| pfam | MGYG000004097_7 | MGYG000004097_7_18 | 20039 | 20905 | - | PRD | PRD | CAT_RBD |
| TC | MGYG000004097_7 | MGYG000004097_7_19 | 20912 | 21424 | - | 4.A.1.2.5 |
| TC | MGYG000004097_7 | MGYG000004097_7_20 | 21875 | 24121 | - | 1.I.1.1.3 |
| STP | MGYG000004097_7 | MGYG000004097_7_21 | 24710 | 25672 | + | FHA |
| STP | MGYG000004097_7 | MGYG000004097_7_22 | 25844 | 27928 | + | Pkinase |
| TC | MGYG000004097_7 | MGYG000004097_7_23 | 28340 | 30679 | + | 3.A.3.5.15 |
Gene ID: MGYG000004097_7_16
Type: CAZyme
Location: 16937 - 18319 (-)
Type: CAZyme
Location: 16937 - 18319 (-)
Gene ID: MGYG000004097_7_17
Type: TC
Location: 18323 - 19939 (-)
Type: TC
Location: 18323 - 19939 (-)
Gene ID: MGYG000004097_7_18
Type: pfam
Location: 20039 - 20905 (-)
Type: pfam
Location: 20039 - 20905 (-)
Gene ID: MGYG000004097_7_19
Type: TC
Location: 20912 - 21424 (-)
Type: TC
Location: 20912 - 21424 (-)
Gene ID: MGYG000004097_7_20
Type: TC
Location: 21875 - 24121 (-)
Type: TC
Location: 21875 - 24121 (-)
Gene ID: MGYG000004097_7_21
Type: STP
Location: 24710 - 25672 (+)
Type: STP
Location: 24710 - 25672 (+)
Gene ID: MGYG000004097_7_22
Type: STP
Location: 25844 - 27928 (+)
Type: STP
Location: 25844 - 27928 (+)
Gene ID: MGYG000004097_7_23
Type: TC
Location: 28340 - 30679 (+)
Type: TC
Location: 28340 - 30679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902492235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.