Cluster: MGYG000004059_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004059
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004059_10 | MGYG000004059_10_6 | 4422 | 5933 | - | 2.A.15.2.2 |
| pfam | MGYG000004059_10 | MGYG000004059_10_7 | 5973 | 7250 | - | CPSase_L_D2 | Dala_Dala_lig_C | ATP-grasp_4 |
| pfam | MGYG000004059_10 | MGYG000004059_10_8 | 7266 | 8462 | - | ATP-grasp_3 | Dala_Dala_lig_C | ATP-grasp_4 |
| CAZyme | MGYG000004059_10 | MGYG000004059_10_9 | 8483 | 9463 | - | GT2 |
| TC | MGYG000004059_10 | MGYG000004059_10_10 | 9482 | 10933 | - | 2.A.66.2.23 |
| CAZyme | MGYG000004059_10 | MGYG000004059_10_11 | 10953 | 11933 | - | GT2 |
| NULL(UNKNOWN) | MGYG000004059_10 | MGYG000004059_10_12 | 12087 | 12299 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000004059_10 | MGYG000004059_10_13 | 12414 | 13325 | - | Indigoidine_A |
| TC | MGYG000004059_10 | MGYG000004059_10_14 | 13489 | 14520 | - | 3.A.1.2.12 |
| TC | MGYG000004059_10 | MGYG000004059_10_15 | 14517 | 15761 | - | 3.A.1.2.17 |
| TC | MGYG000004059_10 | MGYG000004059_10_16 | 15758 | 17305 | - | 3.A.1.2.12 |
Gene ID: MGYG000004059_10_6
Type: TC
Location: 4422 - 5933 (-)
Type: TC
Location: 4422 - 5933 (-)
Gene ID: MGYG000004059_10_7
Type: pfam
Location: 5973 - 7250 (-)
Type: pfam
Location: 5973 - 7250 (-)
Gene ID: MGYG000004059_10_8
Type: pfam
Location: 7266 - 8462 (-)
Type: pfam
Location: 7266 - 8462 (-)
Gene ID: MGYG000004059_10_9
Type: CAZyme
Location: 8483 - 9463 (-)
Type: CAZyme
Location: 8483 - 9463 (-)
Gene ID: MGYG000004059_10_10
Type: TC
Location: 9482 - 10933 (-)
Type: TC
Location: 9482 - 10933 (-)
Gene ID: MGYG000004059_10_11
Type: CAZyme
Location: 10953 - 11933 (-)
Type: CAZyme
Location: 10953 - 11933 (-)
Gene ID: MGYG000004059_10_12
Type:
Location: 12087 - 12299 (-)
Type:
Location: 12087 - 12299 (-)
Gene ID: MGYG000004059_10_13
Type: pfam
Location: 12414 - 13325 (-)
Type: pfam
Location: 12414 - 13325 (-)
Gene ID: MGYG000004059_10_14
Type: TC
Location: 13489 - 14520 (-)
Type: TC
Location: 13489 - 14520 (-)
Gene ID: MGYG000004059_10_15
Type: TC
Location: 14517 - 15761 (-)
Type: TC
Location: 14517 - 15761 (-)
Gene ID: MGYG000004059_10_16
Type: TC
Location: 15758 - 17305 (-)
Type: TC
Location: 15758 - 17305 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_10_6 | vegetarian > omnivore | 2.97107 | 0.00029 |
| MGYG000004059_10_7 | vegetarian > omnivore | 2.33538 | 0.00029 |
| MGYG000004059_10_8 | vegetarian > omnivore | 2.49783 | 0.00029 |
| MGYG000004059_10_9 | vegetarian > omnivore | 2.58344 | 0.00029 |
| MGYG000004059_10_10 | vegetarian > omnivore | 3.13832 | 0.00029 |
| MGYG000004059_10_12 | vegetarian > omnivore | 2.47880 | 0.00029 |
| MGYG000004059_10_15 | vegetarian > vegan | 1.01171 | 0.01057 |