Cluster: MGYG000004059_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004059
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004059_4 | MGYG000004059_4_93 | 90543 | 91358 | - | GT8 |
| TC | MGYG000004059_4 | MGYG000004059_4_94 | 91369 | 92577 | - | 2.A.1.59.4 |
| pfam | MGYG000004059_4 | MGYG000004059_4_95 | 92802 | 93539 | + | DUF364 | DUF4213 |
| pfam | MGYG000004059_4 | MGYG000004059_4_96 | 93777 | 94922 | - | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| TC | MGYG000004059_4 | MGYG000004059_4_97 | 95096 | 96958 | - | 1.A.33.1.4 |
| pfam | MGYG000004059_4 | MGYG000004059_4_98 | 97060 | 97677 | - | GrpE |
| TF | MGYG000004059_4 | MGYG000004059_4_99 | 97664 | 98752 | - | 0043758 |
| TC | MGYG000004059_4 | MGYG000004059_4_100 | 98966 | 100243 | - | 2.A.86.1.8 |
Gene ID: MGYG000004059_4_93
Type: CAZyme
Location: 90543 - 91358 (-)
Type: CAZyme
Location: 90543 - 91358 (-)
Gene ID: MGYG000004059_4_94
Type: TC
Location: 91369 - 92577 (-)
Type: TC
Location: 91369 - 92577 (-)
Gene ID: MGYG000004059_4_95
Type: pfam
Location: 92802 - 93539 (+)
Type: pfam
Location: 92802 - 93539 (+)
Gene ID: MGYG000004059_4_96
Type: pfam
Location: 93777 - 94922 (-)
Type: pfam
Location: 93777 - 94922 (-)
Gene ID: MGYG000004059_4_97
Type: TC
Location: 95096 - 96958 (-)
Type: TC
Location: 95096 - 96958 (-)
Gene ID: MGYG000004059_4_98
Type: pfam
Location: 97060 - 97677 (-)
Type: pfam
Location: 97060 - 97677 (-)
Gene ID: MGYG000004059_4_99
Type: TF
Location: 97664 - 98752 (-)
Type: TF
Location: 97664 - 98752 (-)
Gene ID: MGYG000004059_4_100
Type: TC
Location: 98966 - 100243 (-)
Type: TC
Location: 98966 - 100243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_4_93 | vegan > omnivore | 2.53735 | 0.04963 |
| MGYG000004059_4_93 | vegetarian > omnivore | 2.23722 | 0.00029 |
| MGYG000004059_4_95 | vegetarian > omnivore | 3.57765 | 0.00029 |
| MGYG000004059_4_96 | vegan > omnivore | 1.22857 | 0.04112 |
| MGYG000004059_4_96 | vegetarian > omnivore | 2.24219 | 0.00029 |
| MGYG000004059_4_96 | vegetarian > vegan | 1.01362 | 0.01057 |
| MGYG000004059_4_98 | vegetarian > omnivore | 1.90253 | 0.00029 |
| MGYG000004059_4_98 | vegetarian > vegan | 1.33968 | 0.01057 |
| MGYG000004059_4_99 | vegetarian > omnivore | 2.38670 | 0.00029 |
| MGYG000004059_4_100 | vegetarian > omnivore | 1.61124 | 0.00029 |
| MGYG000004059_4_100 | vegetarian > vegan | 1.05895 | 0.01057 |