Cluster: MGYG000004059_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004059
- CGC Family ID: CGCFAM_00761
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004059_2 | MGYG000004059_2_2 | 770 | 1585 | - | 1.A.23.4.2 |
| pfam | MGYG000004059_2 | MGYG000004059_2_3 | 1758 | 3254 | + | FGGY_N | FGGY_C |
| CAZyme | MGYG000004059_2 | MGYG000004059_2_4 | 3493 | 5412 | + | CBM48 | GH13_9 |
| CAZyme | MGYG000004059_2 | MGYG000004059_2_5 | 5393 | 6871 | + | GT5 |
| CAZyme | MGYG000004059_2 | MGYG000004059_2_6 | 6859 | 9243 | + | GH13_39 |
Gene ID: MGYG000004059_2_2
Type: TC
Location: 770 - 1585 (-)
Type: TC
Location: 770 - 1585 (-)
Gene ID: MGYG000004059_2_3
Type: pfam
Location: 1758 - 3254 (+)
Type: pfam
Location: 1758 - 3254 (+)
Gene ID: MGYG000004059_2_4
Type: CAZyme
Location: 3493 - 5412 (+)
Type: CAZyme
Location: 3493 - 5412 (+)
Gene ID: MGYG000004059_2_5
Type: CAZyme
Location: 5393 - 6871 (+)
Type: CAZyme
Location: 5393 - 6871 (+)
Gene ID: MGYG000004059_2_6
Type: CAZyme
Location: 6859 - 9243 (+)
Type: CAZyme
Location: 6859 - 9243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_2_2 | vegetarian > omnivore | 2.22623 | 0.00029 |
| MGYG000004059_2_4 | vegetarian > omnivore | 1.17871 | 0.00029 |
| MGYG000004059_2_5 | vegetarian > omnivore | 1.01971 | 0.00029 |
| MGYG000004059_2_5 | vegetarian > vegan | 1.02828 | 0.01057 |
| MGYG000004059_2_6 | vegetarian > omnivore | 1.26092 | 0.00029 |