Cluster: MGYG000004059_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: MGYG000004059
- CGC Family ID: CGCFAM_00010
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004059_32 | MGYG000004059_32_1 | 192 | 1670 | - | GH77 |
| TC | MGYG000004059_32 | MGYG000004059_32_2 | 1714 | 2577 | - | 3.A.1.1.45 |
| TC | MGYG000004059_32 | MGYG000004059_32_3 | 2577 | 3728 | - | 3.A.1.1.45 |
| TC | MGYG000004059_32 | MGYG000004059_32_4 | 3912 | 5252 | - | 3.A.1.1.45 |
| TF | MGYG000004059_32 | MGYG000004059_32_5 | 5331 | 6344 | - | LacI |
| TC | MGYG000004059_32 | MGYG000004059_32_6 | 6611 | 8038 | - | 2.A.3.8.12 |
Gene ID: MGYG000004059_32_1
Type: CAZyme
Location: 192 - 1670 (-)
Type: CAZyme
Location: 192 - 1670 (-)
Gene ID: MGYG000004059_32_2
Type: TC
Location: 1714 - 2577 (-)
Type: TC
Location: 1714 - 2577 (-)
Gene ID: MGYG000004059_32_3
Type: TC
Location: 2577 - 3728 (-)
Type: TC
Location: 2577 - 3728 (-)
Gene ID: MGYG000004059_32_4
Type: TC
Location: 3912 - 5252 (-)
Type: TC
Location: 3912 - 5252 (-)
Gene ID: MGYG000004059_32_5
Type: TF
Location: 5331 - 6344 (-)
Type: TF
Location: 5331 - 6344 (-)
Gene ID: MGYG000004059_32_6
Type: TC
Location: 6611 - 8038 (-)
Type: TC
Location: 6611 - 8038 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_32_1 | vegetarian > vegan | 1.04496 | 0.01057 |
| MGYG000004059_32_5 | vegetarian > omnivore | 3.88660 | 0.00029 |