Cluster: MGYG000004059_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004059
- CGC Family ID: CGCFAM_00559
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004059_25 | MGYG000004059_25_1 | 90 | 1532 | - | 2.A.38.1.1 |
| TC | MGYG000004059_25 | MGYG000004059_25_2 | 1552 | 2988 | - | 2.A.38.1.1 |
| TC | MGYG000004059_25 | MGYG000004059_25_3 | 2988 | 4349 | - | 2.A.38.1.1 |
| pfam | MGYG000004059_25 | MGYG000004059_25_4 | 4496 | 5203 | + | DUF2461 |
| CAZyme | MGYG000004059_25 | MGYG000004059_25_5 | 5190 | 6236 | + | GT2 |
| TC | MGYG000004059_25 | MGYG000004059_25_6 | 6244 | 7401 | + | 2.A.42.1.7 |
| peptidase | MGYG000004059_25 | MGYG000004059_25_7 | 7398 | 8309 | + | S09.B04 |
| TC | MGYG000004059_25 | MGYG000004059_25_8 | 8471 | 9664 | + | 2.A.1.46.5 |
Gene ID: MGYG000004059_25_1
Type: TC
Location: 90 - 1532 (-)
Type: TC
Location: 90 - 1532 (-)
Gene ID: MGYG000004059_25_2
Type: TC
Location: 1552 - 2988 (-)
Type: TC
Location: 1552 - 2988 (-)
Gene ID: MGYG000004059_25_3
Type: TC
Location: 2988 - 4349 (-)
Type: TC
Location: 2988 - 4349 (-)
Gene ID: MGYG000004059_25_4
Type: pfam
Location: 4496 - 5203 (+)
Type: pfam
Location: 4496 - 5203 (+)
Gene ID: MGYG000004059_25_5
Type: CAZyme
Location: 5190 - 6236 (+)
Type: CAZyme
Location: 5190 - 6236 (+)
Gene ID: MGYG000004059_25_6
Type: TC
Location: 6244 - 7401 (+)
Type: TC
Location: 6244 - 7401 (+)
Gene ID: MGYG000004059_25_7
Type: peptidase
Location: 7398 - 8309 (+)
Type: peptidase
Location: 7398 - 8309 (+)
Gene ID: MGYG000004059_25_8
Type: TC
Location: 8471 - 9664 (+)
Type: TC
Location: 8471 - 9664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_25_1 | vegetarian > omnivore | 3.31076 | 0.00029 |
| MGYG000004059_25_2 | vegetarian > omnivore | 2.13472 | 0.00029 |
| MGYG000004059_25_3 | vegetarian > omnivore | 1.93099 | 0.00029 |
| MGYG000004059_25_5 | vegetarian > omnivore | 3.03847 | 0.00029 |
| MGYG000004059_25_6 | vegetarian > omnivore | 2.30273 | 0.00029 |
| MGYG000004059_25_6 | vegetarian > vegan | 1.59317 | 0.01057 |
| MGYG000004059_25_7 | vegetarian > omnivore | 1.74730 | 0.00029 |
| MGYG000004059_25_8 | vegetarian > omnivore | 2.33250 | 0.00029 |
| MGYG000004059_25_8 | vegetarian > vegan | 1.68441 | 0.01057 |