Cluster: MGYG000004059_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004059
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004059_11 | MGYG000004059_11_60 | 61824 | 63176 | + | 2.A.66.1.13 |
| pfam | MGYG000004059_11 | MGYG000004059_11_61 | 63218 | 63688 | + | Flavodoxin_2 | FMN_red | Flavodoxin_4 |
| NULL(UNKNOWN) | MGYG000004059_11 | MGYG000004059_11_62 | 63826 | 64461 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000004059_11 | MGYG000004059_11_63 | 64568 | 65527 | - | GT2 |
Gene ID: MGYG000004059_11_60
Type: TC
Location: 61824 - 63176 (+)
Type: TC
Location: 61824 - 63176 (+)
Gene ID: MGYG000004059_11_61
Type: pfam
Location: 63218 - 63688 (+)
Type: pfam
Location: 63218 - 63688 (+)
Gene ID: MGYG000004059_11_62
Type:
Location: 63826 - 64461 (+)
Type:
Location: 63826 - 64461 (+)
Gene ID: MGYG000004059_11_63
Type: CAZyme
Location: 64568 - 65527 (-)
Type: CAZyme
Location: 64568 - 65527 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_11_60 | vegetarian > omnivore | 1.97914 | 0.00029 |
| MGYG000004059_11_61 | vegetarian > omnivore | 2.08256 | 0.00029 |
| MGYG000004059_11_61 | vegetarian > vegan | 1.81439 | 0.01057 |
| MGYG000004059_11_63 | vegan > omnivore | 1.38576 | 0.04303 |