Cluster: MGYG000004059_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004059
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004059_11 | MGYG000004059_11_9 | 7143 | 9047 | + | 9.B.18.2.1 |
| NULL(UNKNOWN) | MGYG000004059_11 | MGYG000004059_11_10 | 9115 | 9426 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | MGYG000004059_11 | MGYG000004059_11_11 | 9439 | 10170 | - | M82.UPW |
| CAZyme | MGYG000004059_11 | MGYG000004059_11_12 | 10197 | 11324 | - | CE9 |
| pfam | MGYG000004059_11 | MGYG000004059_11_13 | 11420 | 11938 | - | SprT-like |
| TC | MGYG000004059_11 | MGYG000004059_11_14 | 12360 | 13778 | + | 2.A.25.1.9 |
| peptidase | MGYG000004059_11 | MGYG000004059_11_15 | 13830 | 14588 | - | S09.UPW |
| TC | MGYG000004059_11 | MGYG000004059_11_16 | 14585 | 15211 | - | 1.A.62.2.1 |
| pfam | MGYG000004059_11 | MGYG000004059_11_17 | 15239 | 16315 | - | MMR_HSR1 | YchF-GTPase_C |
| TC | MGYG000004059_11 | MGYG000004059_11_18 | 16409 | 17788 | - | 2.A.66.1.23 |
| TC | MGYG000004059_11 | MGYG000004059_11_19 | 17955 | 19985 | - | 3.A.16.1.1 |
Gene ID: MGYG000004059_11_9
Type: TC
Location: 7143 - 9047 (+)
Type: TC
Location: 7143 - 9047 (+)
Gene ID: MGYG000004059_11_10
Type:
Location: 9115 - 9426 (-)
Type:
Location: 9115 - 9426 (-)
Gene ID: MGYG000004059_11_11
Type: peptidase
Location: 9439 - 10170 (-)
Type: peptidase
Location: 9439 - 10170 (-)
Gene ID: MGYG000004059_11_12
Type: CAZyme
Location: 10197 - 11324 (-)
Type: CAZyme
Location: 10197 - 11324 (-)
Gene ID: MGYG000004059_11_13
Type: pfam
Location: 11420 - 11938 (-)
Type: pfam
Location: 11420 - 11938 (-)
Gene ID: MGYG000004059_11_14
Type: TC
Location: 12360 - 13778 (+)
Type: TC
Location: 12360 - 13778 (+)
Gene ID: MGYG000004059_11_15
Type: peptidase
Location: 13830 - 14588 (-)
Type: peptidase
Location: 13830 - 14588 (-)
Gene ID: MGYG000004059_11_16
Type: TC
Location: 14585 - 15211 (-)
Type: TC
Location: 14585 - 15211 (-)
Gene ID: MGYG000004059_11_17
Type: pfam
Location: 15239 - 16315 (-)
Type: pfam
Location: 15239 - 16315 (-)
Gene ID: MGYG000004059_11_18
Type: TC
Location: 16409 - 17788 (-)
Type: TC
Location: 16409 - 17788 (-)
Gene ID: MGYG000004059_11_19
Type: TC
Location: 17955 - 19985 (-)
Type: TC
Location: 17955 - 19985 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_11_10 | vegetarian > omnivore | 2.06144 | 0.00029 |
| MGYG000004059_11_12 | vegetarian > omnivore | 2.03926 | 0.00029 |
| MGYG000004059_11_18 | vegetarian > omnivore | 1.77146 | 0.00029 |