Cluster: MGYG000004059_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004059
- CGC Family ID: CGCFAM_02420
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004059_1 | MGYG000004059_1_6 | 6753 | 7580 | + | 8.A.3.2.3 |
| TC | MGYG000004059_1 | MGYG000004059_1_7 | 7584 | 8327 | + | 8.A.3.2.3 |
| pfam | MGYG000004059_1 | MGYG000004059_1_8 | 8349 | 9035 | + | CpsB_CapC |
| CAZyme | MGYG000004059_1 | MGYG000004059_1_9 | 9028 | 10224 | + | GT4 |
| pfam | MGYG000004059_1 | MGYG000004059_1_10 | 10260 | 10976 | + | Wzz |
| CAZyme | MGYG000004059_1 | MGYG000004059_1_11 | 11013 | 11774 | + | GT2 |
Gene ID: MGYG000004059_1_6
Type: TC
Location: 6753 - 7580 (+)
Type: TC
Location: 6753 - 7580 (+)
Gene ID: MGYG000004059_1_7
Type: TC
Location: 7584 - 8327 (+)
Type: TC
Location: 7584 - 8327 (+)
Gene ID: MGYG000004059_1_8
Type: pfam
Location: 8349 - 9035 (+)
Type: pfam
Location: 8349 - 9035 (+)
Gene ID: MGYG000004059_1_9
Type: CAZyme
Location: 9028 - 10224 (+)
Type: CAZyme
Location: 9028 - 10224 (+)
Gene ID: MGYG000004059_1_10
Type: pfam
Location: 10260 - 10976 (+)
Type: pfam
Location: 10260 - 10976 (+)
Gene ID: MGYG000004059_1_11
Type: CAZyme
Location: 11013 - 11774 (+)
Type: CAZyme
Location: 11013 - 11774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp003150355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004059_1_6 | vegetarian > omnivore | 3.76501 | 0.00029 |
| MGYG000004059_1_6 | vegetarian > vegan | 3.53119 | 0.01057 |
| MGYG000004059_1_7 | vegetarian > omnivore | 1.42898 | 0.00029 |
| MGYG000004059_1_7 | vegetarian > vegan | 1.95303 | 0.01057 |
| MGYG000004059_1_8 | vegetarian > omnivore | 1.92935 | 0.00029 |
| MGYG000004059_1_8 | vegetarian > vegan | 1.98398 | 0.01057 |
| MGYG000004059_1_9 | vegetarian > omnivore | 1.93997 | 0.00029 |
| MGYG000004059_1_9 | vegetarian > vegan | 1.83588 | 0.01057 |