Cluster: MGYG000004031_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004031
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004031_6 | MGYG000004031_6_33 | 40596 | 41765 | - | CE9 |
| STP | MGYG000004031_6 | MGYG000004031_6_34 | 41882 | 43048 | - | SIS | SIS |
| TF | MGYG000004031_6 | MGYG000004031_6_35 | 43160 | 43894 | - | GntR |
| TC | MGYG000004031_6 | MGYG000004031_6_36 | 43982 | 44410 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000004031_6 | MGYG000004031_6_37 | 44492 | 45115 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004031_6 | MGYG000004031_6_38 | 45304 | 46143 | - | 4.A.6.1.18 |
| TC | MGYG000004031_6 | MGYG000004031_6_39 | 46133 | 47017 | - | 4.A.6.1.18 |
| TC | MGYG000004031_6 | MGYG000004031_6_40 | 47111 | 47575 | - | 4.A.6.1.18 |
| CAZyme | MGYG000004031_6 | MGYG000004031_6_41 | 47578 | 49374 | - | GH35 |
| pfam | MGYG000004031_6 | MGYG000004031_6_42 | 49860 | 50291 | - | DUF386 |
| CAZyme | MGYG000004031_6 | MGYG000004031_6_43 | 50366 | 51535 | - | CE9 |
| TF | MGYG000004031_6 | MGYG000004031_6_44 | 51679 | 52410 | - | GntR |
| TC | MGYG000004031_6 | MGYG000004031_6_45 | 52642 | 54129 | - | 4.A.1.1.7 |
Gene ID: MGYG000004031_6_33
Type: CAZyme
Location: 40596 - 41765 (-)
Type: CAZyme
Location: 40596 - 41765 (-)
Gene ID: MGYG000004031_6_34
Type: STP
Location: 41882 - 43048 (-)
Type: STP
Location: 41882 - 43048 (-)
Gene ID: MGYG000004031_6_35
Type: TF
Location: 43160 - 43894 (-)
Type: TF
Location: 43160 - 43894 (-)
Gene ID: MGYG000004031_6_36
Type: TC
Location: 43982 - 44410 (-)
Type: TC
Location: 43982 - 44410 (-)
Gene ID: MGYG000004031_6_37
Type:
Location: 44492 - 45115 (-)
Type:
Location: 44492 - 45115 (-)
Gene ID: MGYG000004031_6_38
Type: TC
Location: 45304 - 46143 (-)
Type: TC
Location: 45304 - 46143 (-)
Gene ID: MGYG000004031_6_39
Type: TC
Location: 46133 - 47017 (-)
Type: TC
Location: 46133 - 47017 (-)
Gene ID: MGYG000004031_6_40
Type: TC
Location: 47111 - 47575 (-)
Type: TC
Location: 47111 - 47575 (-)
Gene ID: MGYG000004031_6_41
Type: CAZyme
Location: 47578 - 49374 (-)
Type: CAZyme
Location: 47578 - 49374 (-)
Gene ID: MGYG000004031_6_42
Type: pfam
Location: 49860 - 50291 (-)
Type: pfam
Location: 49860 - 50291 (-)
Gene ID: MGYG000004031_6_43
Type: CAZyme
Location: 50366 - 51535 (-)
Type: CAZyme
Location: 50366 - 51535 (-)
Gene ID: MGYG000004031_6_44
Type: TF
Location: 51679 - 52410 (-)
Type: TF
Location: 51679 - 52410 (-)
Gene ID: MGYG000004031_6_45
Type: TC
Location: 52642 - 54129 (-)
Type: TC
Location: 52642 - 54129 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902491565
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004031_6_38 | vegetarian > vegan | 2.58390 | 0.02517 |
| MGYG000004031_6_39 | vegetarian > vegan | 2.55896 | 0.02735 |
| MGYG000004031_6_40 | vegetarian > vegan | 3.45449 | 0.02517 |
| MGYG000004031_6_41 | vegetarian > vegan | 2.83508 | 0.02517 |
| MGYG000004031_6_44 | vegetarian > vegan | 3.27312 | 0.02517 |