Cluster: MGYG000004021_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004021
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004021_3 | MGYG000004021_3_36 | 46801 | 47193 | + | 9.B.124.1.3 |
| pfam | MGYG000004021_3 | MGYG000004021_3_37 | 47297 | 49393 | - | DEAD | Helicase_C | ResIII | RecG_wedge | RecG_dom3_C |
| pfam | MGYG000004021_3 | MGYG000004021_3_38 | 49386 | 50063 | - | IspD | NTP_transf_3 |
| CAZyme | MGYG000004021_3 | MGYG000004021_3_39 | 50350 | 51267 | + | CBM50 |
| pfam | MGYG000004021_3 | MGYG000004021_3_40 | 51320 | 54538 | + | MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C | Dala_Dala_lig_C |
| TC | MGYG000004021_3 | MGYG000004021_3_41 | 54707 | 56908 | + | 3.A.10.1.10 |
Gene ID: MGYG000004021_3_36
Type: TC
Location: 46801 - 47193 (+)
Type: TC
Location: 46801 - 47193 (+)
Gene ID: MGYG000004021_3_37
Type: pfam
Location: 47297 - 49393 (-)
Type: pfam
Location: 47297 - 49393 (-)
Gene ID: MGYG000004021_3_38
Type: pfam
Location: 49386 - 50063 (-)
Type: pfam
Location: 49386 - 50063 (-)
Gene ID: MGYG000004021_3_39
Type: CAZyme
Location: 50350 - 51267 (+)
Type: CAZyme
Location: 50350 - 51267 (+)
Gene ID: MGYG000004021_3_40
Type: pfam
Location: 51320 - 54538 (+)
Type: pfam
Location: 51320 - 54538 (+)
Gene ID: MGYG000004021_3_41
Type: TC
Location: 54707 - 56908 (+)
Type: TC
Location: 54707 - 56908 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004021_3_40 | vegetarian > omnivore | 1.05936 | 0.03201 |