Cluster: MGYG000004021_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004021
- CGC Family ID: CGCFAM_03992
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004021_31 | MGYG000004021_31_2 | 204 | 1757 | - | 3.B.1.1.2 |
| STP | MGYG000004021_31 | MGYG000004021_31_3 | 1776 | 2237 | - | Glyoxalase |
| TC | MGYG000004021_31 | MGYG000004021_31_4 | 2623 | 4533 | + | 1.A.33.1.2 |
| CAZyme | MGYG000004021_31 | MGYG000004021_31_5 | 4653 | 6236 | - | CE8 |
| pfam | MGYG000004021_31 | MGYG000004021_31_6 | 6405 | 7403 | + | 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 |
| TC | MGYG000004021_31 | MGYG000004021_31_7 | 7424 | 8716 | + | 2.A.35.1.5 |
| pfam | MGYG000004021_31 | MGYG000004021_31_8 | 8883 | 9362 | + | PgpA |
| pfam | MGYG000004021_31 | MGYG000004021_31_9 | 9400 | 9828 | + | GtrA_DPMS_TM |
| TC | MGYG000004021_31 | MGYG000004021_31_10 | 9844 | 10500 | + | 4.F.1.3.2 |
| pfam | MGYG000004021_31 | MGYG000004021_31_11 | 10516 | 11445 | + | PAP2 | PAP2_3 |
| pfam | MGYG000004021_31 | MGYG000004021_31_12 | 11615 | 12001 | - | DUF2752 |
| TC | MGYG000004021_31 | MGYG000004021_31_13 | 11994 | 12542 | - | 8.A.58.2.7 |
Gene ID: MGYG000004021_31_2
Type: TC
Location: 204 - 1757 (-)
Type: TC
Location: 204 - 1757 (-)
Gene ID: MGYG000004021_31_3
Type: STP
Location: 1776 - 2237 (-)
Type: STP
Location: 1776 - 2237 (-)
Gene ID: MGYG000004021_31_4
Type: TC
Location: 2623 - 4533 (+)
Type: TC
Location: 2623 - 4533 (+)
Gene ID: MGYG000004021_31_5
Type: CAZyme
Location: 4653 - 6236 (-)
Type: CAZyme
Location: 4653 - 6236 (-)
Gene ID: MGYG000004021_31_6
Type: pfam
Location: 6405 - 7403 (+)
Type: pfam
Location: 6405 - 7403 (+)
Gene ID: MGYG000004021_31_7
Type: TC
Location: 7424 - 8716 (+)
Type: TC
Location: 7424 - 8716 (+)
Gene ID: MGYG000004021_31_8
Type: pfam
Location: 8883 - 9362 (+)
Type: pfam
Location: 8883 - 9362 (+)
Gene ID: MGYG000004021_31_9
Type: pfam
Location: 9400 - 9828 (+)
Type: pfam
Location: 9400 - 9828 (+)
Gene ID: MGYG000004021_31_10
Type: TC
Location: 9844 - 10500 (+)
Type: TC
Location: 9844 - 10500 (+)
Gene ID: MGYG000004021_31_11
Type: pfam
Location: 10516 - 11445 (+)
Type: pfam
Location: 10516 - 11445 (+)
Gene ID: MGYG000004021_31_12
Type: pfam
Location: 11615 - 12001 (-)
Type: pfam
Location: 11615 - 12001 (-)
Gene ID: MGYG000004021_31_13
Type: TC
Location: 11994 - 12542 (-)
Type: TC
Location: 11994 - 12542 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004021_31_3 | vegetarian > omnivore | 1.42593 | 0.04819 |
| MGYG000004021_31_3 | vegetarian > vegan | 1.83156 | 0.00565 |