Cluster: MGYG000004021_CGC23
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 14
- Substrate:
- Genome ID: MGYG000004021
- CGC Family ID: CGCFAM_02942
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004021_16 | MGYG000004021_16_1 | 557 | 3070 | + | GH95 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_2 | 3084 | 5504 | + | GH2 |
| pfam | MGYG000004021_16 | MGYG000004021_16_3 | 5530 | 6297 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_4 | 6496 | 7485 | + | GH43_18 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_5 | 7534 | 9486 | + | GH51_2 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_6 | 9500 | 11032 | + | GH51_1 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_7 | 11182 | 12714 | + | CE20 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_8 | 12736 | 13935 | + | GH105 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_9 | 14110 | 16392 | + | CBM89 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_10 | 16857 | 19739 | + | PL1_2 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_11 | 19806 | 20603 | + | CE12 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_12 | 20766 | 23651 | + | GH2 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_13 | 23661 | 26474 | + | GH106 |
| pfam | MGYG000004021_16 | MGYG000004021_16_14 | 26690 | 28171 | + | FGGY_N | FGGY_C |
| pfam | MGYG000004021_16 | MGYG000004021_16_15 | 28204 | 29454 | + | RhaA |
| TC | MGYG000004021_16 | MGYG000004021_16_16 | 29545 | 30558 | + | 2.A.7.6.1 |
| pfam | MGYG000004021_16 | MGYG000004021_16_17 | 30590 | 31399 | + | Aldolase_II |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_18 | 31433 | 32746 | + | GH105 |
| CAZyme | MGYG000004021_16 | MGYG000004021_16_19 | 32826 | 34259 | + | GH28 |
| NULL(UNKNOWN) | MGYG000004021_16 | MGYG000004021_16_20 | 34642 | 36789 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000004021_16 | MGYG000004021_16_21 | 36850 | 39261 | + | Fasciclin |
| TC | MGYG000004021_16 | MGYG000004021_16_22 | 39280 | 42576 | + | 1.B.14.6.1 |
Gene ID: MGYG000004021_16_1
Type: CAZyme
Location: 557 - 3070 (+)
Type: CAZyme
Location: 557 - 3070 (+)
Gene ID: MGYG000004021_16_2
Type: CAZyme
Location: 3084 - 5504 (+)
Type: CAZyme
Location: 3084 - 5504 (+)
Gene ID: MGYG000004021_16_3
Type: pfam
Location: 5530 - 6297 (+)
Type: pfam
Location: 5530 - 6297 (+)
Gene ID: MGYG000004021_16_4
Type: CAZyme
Location: 6496 - 7485 (+)
Type: CAZyme
Location: 6496 - 7485 (+)
Gene ID: MGYG000004021_16_5
Type: CAZyme
Location: 7534 - 9486 (+)
Type: CAZyme
Location: 7534 - 9486 (+)
Gene ID: MGYG000004021_16_6
Type: CAZyme
Location: 9500 - 11032 (+)
Type: CAZyme
Location: 9500 - 11032 (+)
Gene ID: MGYG000004021_16_7
Type: CAZyme
Location: 11182 - 12714 (+)
Type: CAZyme
Location: 11182 - 12714 (+)
Gene ID: MGYG000004021_16_8
Type: CAZyme
Location: 12736 - 13935 (+)
Type: CAZyme
Location: 12736 - 13935 (+)
Gene ID: MGYG000004021_16_9
Type: CAZyme
Location: 14110 - 16392 (+)
Type: CAZyme
Location: 14110 - 16392 (+)
Gene ID: MGYG000004021_16_10
Type: CAZyme
Location: 16857 - 19739 (+)
Type: CAZyme
Location: 16857 - 19739 (+)
Gene ID: MGYG000004021_16_11
Type: CAZyme
Location: 19806 - 20603 (+)
Type: CAZyme
Location: 19806 - 20603 (+)
Gene ID: MGYG000004021_16_12
Type: CAZyme
Location: 20766 - 23651 (+)
Type: CAZyme
Location: 20766 - 23651 (+)
Gene ID: MGYG000004021_16_13
Type: CAZyme
Location: 23661 - 26474 (+)
Type: CAZyme
Location: 23661 - 26474 (+)
Gene ID: MGYG000004021_16_14
Type: pfam
Location: 26690 - 28171 (+)
Type: pfam
Location: 26690 - 28171 (+)
Gene ID: MGYG000004021_16_15
Type: pfam
Location: 28204 - 29454 (+)
Type: pfam
Location: 28204 - 29454 (+)
Gene ID: MGYG000004021_16_16
Type: TC
Location: 29545 - 30558 (+)
Type: TC
Location: 29545 - 30558 (+)
Gene ID: MGYG000004021_16_17
Type: pfam
Location: 30590 - 31399 (+)
Type: pfam
Location: 30590 - 31399 (+)
Gene ID: MGYG000004021_16_18
Type: CAZyme
Location: 31433 - 32746 (+)
Type: CAZyme
Location: 31433 - 32746 (+)
Gene ID: MGYG000004021_16_19
Type: CAZyme
Location: 32826 - 34259 (+)
Type: CAZyme
Location: 32826 - 34259 (+)
Gene ID: MGYG000004021_16_20
Type:
Location: 34642 - 36789 (+)
Type:
Location: 34642 - 36789 (+)
Gene ID: MGYG000004021_16_21
Type: pfam
Location: 36850 - 39261 (+)
Type: pfam
Location: 36850 - 39261 (+)
Gene ID: MGYG000004021_16_22
Type: TC
Location: 39280 - 42576 (+)
Type: TC
Location: 39280 - 42576 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004021_16_8 | vegetarian > vegan | 4.45437 | 0.00565 |
| MGYG000004021_16_16 | vegetarian > vegan | 1.69230 | 0.00565 |