Cluster: MGYG000004018_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000004018
- CGC Family ID: CGCFAM_00018
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004018_3 | MGYG000004018_3_9 | 9647 | 10627 | - | GT2 |
| CAZyme | MGYG000004018_3 | MGYG000004018_3_10 | 10624 | 11658 | - | GT2 |
| pfam | MGYG000004018_3 | MGYG000004018_3_11 | 11655 | 13091 | - | O-ag_pol_Wzy |
| CAZyme | MGYG000004018_3 | MGYG000004018_3_12 | 13088 | 14224 | - | GT4 |
| pfam | MGYG000004018_3 | MGYG000004018_3_13 | 14224 | 14775 | - | Hexapep | Hexapep_2 |
| CAZyme | MGYG000004018_3 | MGYG000004018_3_14 | 14772 | 15884 | - | GT4 |
| pfam | MGYG000004018_3 | MGYG000004018_3_15 | 15884 | 17068 | - | Epimerase_2 |
| pfam | MGYG000004018_3 | MGYG000004018_3_16 | 17073 | 18290 | - | Epimerase | Polysacc_synt_C |
| TC | MGYG000004018_3 | MGYG000004018_3_17 | 18292 | 19350 | - | 9.B.18.2.1 |
| CAZyme | MGYG000004018_3 | MGYG000004018_3_18 | 19343 | 20563 | - | GT4 |
| TC | MGYG000004018_3 | MGYG000004018_3_19 | 20563 | 21351 | - | 9.B.18.1.3 |
Gene ID: MGYG000004018_3_9
Type: CAZyme
Location: 9647 - 10627 (-)
Type: CAZyme
Location: 9647 - 10627 (-)
Gene ID: MGYG000004018_3_10
Type: CAZyme
Location: 10624 - 11658 (-)
Type: CAZyme
Location: 10624 - 11658 (-)
Gene ID: MGYG000004018_3_11
Type: pfam
Location: 11655 - 13091 (-)
Type: pfam
Location: 11655 - 13091 (-)
Gene ID: MGYG000004018_3_12
Type: CAZyme
Location: 13088 - 14224 (-)
Type: CAZyme
Location: 13088 - 14224 (-)
Gene ID: MGYG000004018_3_13
Type: pfam
Location: 14224 - 14775 (-)
Type: pfam
Location: 14224 - 14775 (-)
Gene ID: MGYG000004018_3_14
Type: CAZyme
Location: 14772 - 15884 (-)
Type: CAZyme
Location: 14772 - 15884 (-)
Gene ID: MGYG000004018_3_15
Type: pfam
Location: 15884 - 17068 (-)
Type: pfam
Location: 15884 - 17068 (-)
Gene ID: MGYG000004018_3_16
Type: pfam
Location: 17073 - 18290 (-)
Type: pfam
Location: 17073 - 18290 (-)
Gene ID: MGYG000004018_3_17
Type: TC
Location: 18292 - 19350 (-)
Type: TC
Location: 18292 - 19350 (-)
Gene ID: MGYG000004018_3_18
Type: CAZyme
Location: 19343 - 20563 (-)
Type: CAZyme
Location: 19343 - 20563 (-)
Gene ID: MGYG000004018_3_19
Type: TC
Location: 20563 - 21351 (-)
Type: TC
Location: 20563 - 21351 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004018_3_16 | vegetarian > omnivore | 1.43050 | 0.02739 |
| MGYG000004018_3_16 | vegetarian > vegan | 1.86298 | 0.02677 |