dbCAN HGM

Cluster: MGYG000004018_CGC4

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 13
CAZyme Count: 7
Substrate:
Genome ID: MGYG000004018
CGC Family ID: CGCFAM_00398
Continent: Europe
Source Study: Almeida et al., 2021 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	MGYG000004018_1	MGYG000004018_1_293	340504	341523	-	GT2
pfam	MGYG000004018_1	MGYG000004018_1_294	341694	342824	-	Acyl_transf_3
CAZyme	MGYG000004018_1	MGYG000004018_1_295	342937	344040	+	GT2
CAZyme	MGYG000004018_1	MGYG000004018_1_296	344047	345087	+	GT2
CAZyme	MGYG000004018_1	MGYG000004018_1_297	345162	346280	+	GT2
CAZyme	MGYG000004018_1	MGYG000004018_1_298	346293	347360	+	GT2
CAZyme	MGYG000004018_1	MGYG000004018_1_299	347361	349847	+	GT2 \| GT2
pfam	MGYG000004018_1	MGYG000004018_1_300	350343	351419	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_2 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
pfam	MGYG000004018_1	MGYG000004018_1_301	351575	353710	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
CAZyme	MGYG000004018_1	MGYG000004018_1_302	353978	354670	+	GH25
pfam	MGYG000004018_1	MGYG000004018_1_303	354758	355711	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
pfam	MGYG000004018_1	MGYG000004018_1_304	355811	357952	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Peptidase_C39_2 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
TC	MGYG000004018_1	MGYG000004018_1_305	358014	358955	-	2.A.7.18.1

Gene ID: MGYG000004018_1_293
Type: CAZyme
Location: 340504 - 341523 (-)

Gene ID: MGYG000004018_1_294
Type: pfam
Location: 341694 - 342824 (-)

Gene ID: MGYG000004018_1_295
Type: CAZyme
Location: 342937 - 344040 (+)

Gene ID: MGYG000004018_1_296
Type: CAZyme
Location: 344047 - 345087 (+)

Gene ID: MGYG000004018_1_297
Type: CAZyme
Location: 345162 - 346280 (+)

Gene ID: MGYG000004018_1_298
Type: CAZyme
Location: 346293 - 347360 (+)

Gene ID: MGYG000004018_1_299
Type: CAZyme
Location: 347361 - 349847 (+)

Gene ID: MGYG000004018_1_300
Type: pfam
Location: 350343 - 351419 (+)

Gene ID: MGYG000004018_1_301
Type: pfam
Location: 351575 - 353710 (+)

Gene ID: MGYG000004018_1_302
Type: CAZyme
Location: 353978 - 354670 (+)

Gene ID: MGYG000004018_1_303
Type: pfam
Location: 354758 - 355711 (+)

Gene ID: MGYG000004018_1_304
Type: pfam
Location: 355811 - 357952 (+)

Gene ID: MGYG000004018_1_305
Type: TC
Location: 358014 - 358955 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Actinomycetota

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Class

Coriobacteriia

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Order

Coriobacteriales

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Family

Coriobacteriaceae

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Genus

Collinsella

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Species

Collinsella aerofaciens_AD

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
MGYG000004018_1_294	vegan > omnivore	1.81177	0.01057
MGYG000004018_1_294	vegetarian > omnivore	1.62625	0.02739

Gene ID	Condition Pair	log2FC	FDR P-value
MGYG000004018_1_303	vegan > omnivore	1.35311	0.04607
MGYG000004018_1_304	vegan > omnivore	1.17345	0.03695

🧭 Explore Read Mapping of CGC

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