Cluster: MGYG000004018_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004018
- CGC Family ID: CGCFAM_00019
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004018_1 | MGYG000004018_1_155 | 164964 | 167303 | - | 3.A.3.5.15 |
| STP | MGYG000004018_1 | MGYG000004018_1_156 | 167956 | 170040 | - | Pkinase |
| STP | MGYG000004018_1 | MGYG000004018_1_157 | 170212 | 171174 | - | FHA |
| TC | MGYG000004018_1 | MGYG000004018_1_158 | 171682 | 173940 | + | 1.I.1.1.3 |
| STP | MGYG000004018_1 | MGYG000004018_1_159 | 174564 | 175325 | + | Fer4 |
| TC | MGYG000004018_1 | MGYG000004018_1_160 | 175669 | 176181 | + | 4.A.1.2.2 |
| pfam | MGYG000004018_1 | MGYG000004018_1_161 | 176188 | 177054 | + | PRD | PRD | CAT_RBD |
| TC | MGYG000004018_1 | MGYG000004018_1_162 | 177154 | 178770 | + | 4.A.1.1.3 |
| CAZyme | MGYG000004018_1 | MGYG000004018_1_163 | 178774 | 180156 | + | GH4 |
| STP | MGYG000004018_1 | MGYG000004018_1_164 | 180413 | 182245 | + | Pyr_redox_2 |
| TC | MGYG000004018_1 | MGYG000004018_1_165 | 182239 | 184050 | + | 3.D.1.1.1 |
| NULL(UNKNOWN) | MGYG000004018_1 | MGYG000004018_1_166 | 184053 | 185111 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004018_1 | MGYG000004018_1_167 | 185115 | 186494 | + | 3.A.1.17.10 |
Gene ID: MGYG000004018_1_155
Type: TC
Location: 164964 - 167303 (-)
Type: TC
Location: 164964 - 167303 (-)
Gene ID: MGYG000004018_1_156
Type: STP
Location: 167956 - 170040 (-)
Type: STP
Location: 167956 - 170040 (-)
Gene ID: MGYG000004018_1_157
Type: STP
Location: 170212 - 171174 (-)
Type: STP
Location: 170212 - 171174 (-)
Gene ID: MGYG000004018_1_158
Type: TC
Location: 171682 - 173940 (+)
Type: TC
Location: 171682 - 173940 (+)
Gene ID: MGYG000004018_1_159
Type: STP
Location: 174564 - 175325 (+)
Type: STP
Location: 174564 - 175325 (+)
Gene ID: MGYG000004018_1_160
Type: TC
Location: 175669 - 176181 (+)
Type: TC
Location: 175669 - 176181 (+)
Gene ID: MGYG000004018_1_161
Type: pfam
Location: 176188 - 177054 (+)
Type: pfam
Location: 176188 - 177054 (+)
Gene ID: MGYG000004018_1_162
Type: TC
Location: 177154 - 178770 (+)
Type: TC
Location: 177154 - 178770 (+)
Gene ID: MGYG000004018_1_163
Type: CAZyme
Location: 178774 - 180156 (+)
Type: CAZyme
Location: 178774 - 180156 (+)
Gene ID: MGYG000004018_1_164
Type: STP
Location: 180413 - 182245 (+)
Type: STP
Location: 180413 - 182245 (+)
Gene ID: MGYG000004018_1_165
Type: TC
Location: 182239 - 184050 (+)
Type: TC
Location: 182239 - 184050 (+)
Gene ID: MGYG000004018_1_166
Type:
Location: 184053 - 185111 (+)
Type:
Location: 184053 - 185111 (+)
Gene ID: MGYG000004018_1_167
Type: TC
Location: 185115 - 186494 (+)
Type: TC
Location: 185115 - 186494 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.