Cluster: MGYG000003983_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003983
- CGC Family ID: CGCFAM_00018
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003983_11 | MGYG000003983_11_8 | 10157 | 10945 | + | 9.B.18.1.3 |
| CAZyme | MGYG000003983_11 | MGYG000003983_11_9 | 10945 | 12165 | + | GT4 |
| TC | MGYG000003983_11 | MGYG000003983_11_10 | 12158 | 13216 | + | 9.B.18.2.1 |
| pfam | MGYG000003983_11 | MGYG000003983_11_11 | 13218 | 14435 | + | Epimerase | Polysacc_synt_C |
| pfam | MGYG000003983_11 | MGYG000003983_11_12 | 14440 | 15624 | + | Epimerase_2 |
| CAZyme | MGYG000003983_11 | MGYG000003983_11_13 | 15624 | 16736 | + | GT4 |
| NULL(UNKNOWN) | MGYG000003983_11 | MGYG000003983_11_14 | 16733 | 17137 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003983_11 | MGYG000003983_11_15 | 17282 | 18418 | + | GT4 |
| pfam | MGYG000003983_11 | MGYG000003983_11_16 | 18415 | 19851 | + | O-ag_pol_Wzy |
| CAZyme | MGYG000003983_11 | MGYG000003983_11_17 | 19848 | 20882 | + | GT2 |
| CAZyme | MGYG000003983_11 | MGYG000003983_11_18 | 20879 | 21859 | + | GT2 |
Gene ID: MGYG000003983_11_8
Type: TC
Location: 10157 - 10945 (+)
Type: TC
Location: 10157 - 10945 (+)
Gene ID: MGYG000003983_11_9
Type: CAZyme
Location: 10945 - 12165 (+)
Type: CAZyme
Location: 10945 - 12165 (+)
Gene ID: MGYG000003983_11_10
Type: TC
Location: 12158 - 13216 (+)
Type: TC
Location: 12158 - 13216 (+)
Gene ID: MGYG000003983_11_11
Type: pfam
Location: 13218 - 14435 (+)
Type: pfam
Location: 13218 - 14435 (+)
Gene ID: MGYG000003983_11_12
Type: pfam
Location: 14440 - 15624 (+)
Type: pfam
Location: 14440 - 15624 (+)
Gene ID: MGYG000003983_11_13
Type: CAZyme
Location: 15624 - 16736 (+)
Type: CAZyme
Location: 15624 - 16736 (+)
Gene ID: MGYG000003983_11_14
Type:
Location: 16733 - 17137 (+)
Type:
Location: 16733 - 17137 (+)
Gene ID: MGYG000003983_11_15
Type: CAZyme
Location: 17282 - 18418 (+)
Type: CAZyme
Location: 17282 - 18418 (+)
Gene ID: MGYG000003983_11_16
Type: pfam
Location: 18415 - 19851 (+)
Type: pfam
Location: 18415 - 19851 (+)
Gene ID: MGYG000003983_11_17
Type: CAZyme
Location: 19848 - 20882 (+)
Type: CAZyme
Location: 19848 - 20882 (+)
Gene ID: MGYG000003983_11_18
Type: CAZyme
Location: 20879 - 21859 (+)
Type: CAZyme
Location: 20879 - 21859 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902491055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003983_11_11 | vegetarian > omnivore | 1.35383 | 0.03093 |
| MGYG000003983_11_11 | vegetarian > vegan | 1.87911 | 0.01548 |