Cluster: MGYG000003983_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: MGYG000003983
- CGC Family ID: CGCFAM_00243
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003983_4 | MGYG000003983_4_23 | 27762 | 28931 | - | CE9 |
| STP | MGYG000003983_4 | MGYG000003983_4_24 | 29049 | 30215 | - | SIS | SIS |
| TF | MGYG000003983_4 | MGYG000003983_4_25 | 30327 | 31061 | - | GntR |
| TC | MGYG000003983_4 | MGYG000003983_4_26 | 31149 | 31577 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000003983_4 | MGYG000003983_4_27 | 31659 | 32282 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003983_4 | MGYG000003983_4_28 | 32471 | 33310 | - | 4.A.6.1.18 |
| TC | MGYG000003983_4 | MGYG000003983_4_29 | 33300 | 34187 | - | 4.A.6.1.18 |
| TC | MGYG000003983_4 | MGYG000003983_4_30 | 34281 | 34745 | - | 4.A.6.1.18 |
| CAZyme | MGYG000003983_4 | MGYG000003983_4_31 | 34748 | 36544 | - | GH35 |
| pfam | MGYG000003983_4 | MGYG000003983_4_32 | 37030 | 37503 | - | DUF386 |
| CAZyme | MGYG000003983_4 | MGYG000003983_4_33 | 37536 | 38705 | - | CE9 |
| TF | MGYG000003983_4 | MGYG000003983_4_34 | 38849 | 39580 | - | GntR |
| TC | MGYG000003983_4 | MGYG000003983_4_35 | 39813 | 40493 | - | 4.A.1.1.2 |
| TC | MGYG000003983_4 | MGYG000003983_4_36 | 40490 | 41302 | - | 4.A.1.1.7 |
Gene ID: MGYG000003983_4_23
Type: CAZyme
Location: 27762 - 28931 (-)
Type: CAZyme
Location: 27762 - 28931 (-)
Gene ID: MGYG000003983_4_24
Type: STP
Location: 29049 - 30215 (-)
Type: STP
Location: 29049 - 30215 (-)
Gene ID: MGYG000003983_4_25
Type: TF
Location: 30327 - 31061 (-)
Type: TF
Location: 30327 - 31061 (-)
Gene ID: MGYG000003983_4_26
Type: TC
Location: 31149 - 31577 (-)
Type: TC
Location: 31149 - 31577 (-)
Gene ID: MGYG000003983_4_27
Type:
Location: 31659 - 32282 (-)
Type:
Location: 31659 - 32282 (-)
Gene ID: MGYG000003983_4_28
Type: TC
Location: 32471 - 33310 (-)
Type: TC
Location: 32471 - 33310 (-)
Gene ID: MGYG000003983_4_29
Type: TC
Location: 33300 - 34187 (-)
Type: TC
Location: 33300 - 34187 (-)
Gene ID: MGYG000003983_4_30
Type: TC
Location: 34281 - 34745 (-)
Type: TC
Location: 34281 - 34745 (-)
Gene ID: MGYG000003983_4_31
Type: CAZyme
Location: 34748 - 36544 (-)
Type: CAZyme
Location: 34748 - 36544 (-)
Gene ID: MGYG000003983_4_32
Type: pfam
Location: 37030 - 37503 (-)
Type: pfam
Location: 37030 - 37503 (-)
Gene ID: MGYG000003983_4_33
Type: CAZyme
Location: 37536 - 38705 (-)
Type: CAZyme
Location: 37536 - 38705 (-)
Gene ID: MGYG000003983_4_34
Type: TF
Location: 38849 - 39580 (-)
Type: TF
Location: 38849 - 39580 (-)
Gene ID: MGYG000003983_4_35
Type: TC
Location: 39813 - 40493 (-)
Type: TC
Location: 39813 - 40493 (-)
Gene ID: MGYG000003983_4_36
Type: TC
Location: 40490 - 41302 (-)
Type: TC
Location: 40490 - 41302 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902491055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003983_4_28 | vegetarian > vegan | 2.28520 | 0.01548 |
| MGYG000003983_4_30 | vegetarian > vegan | 3.12832 | 0.01548 |
| MGYG000003983_4_31 | vegetarian > vegan | 2.55131 | 0.01548 |
| MGYG000003983_4_34 | vegetarian > vegan | 3.17670 | 0.01548 |