Cluster: MGYG000003920_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003920
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003920_12 | MGYG000003920_12_8 | 5415 | 11828 | - | GH31_18 |
| TF | MGYG000003920_12 | MGYG000003920_12_9 | 12332 | 12772 | - | MarR |
| NULL(UNKNOWN) | MGYG000003920_12 | MGYG000003920_12_10 | 12877 | 13203 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003920_12 | MGYG000003920_12_11 | 13400 | 14227 | - | 4.A.6.1.6 |
| TC | MGYG000003920_12 | MGYG000003920_12_12 | 14227 | 15084 | - | 4.A.6.1.1 |
| TC | MGYG000003920_12 | MGYG000003920_12_13 | 15157 | 15645 | - | 4.A.6.1.9 |
Gene ID: MGYG000003920_12_8
Type: CAZyme
Location: 5415 - 11828 (-)
Type: CAZyme
Location: 5415 - 11828 (-)
Gene ID: MGYG000003920_12_9
Type: TF
Location: 12332 - 12772 (-)
Type: TF
Location: 12332 - 12772 (-)
Gene ID: MGYG000003920_12_10
Type:
Location: 12877 - 13203 (-)
Type:
Location: 12877 - 13203 (-)
Gene ID: MGYG000003920_12_11
Type: TC
Location: 13400 - 14227 (-)
Type: TC
Location: 13400 - 14227 (-)
Gene ID: MGYG000003920_12_12
Type: TC
Location: 14227 - 15084 (-)
Type: TC
Location: 14227 - 15084 (-)
Gene ID: MGYG000003920_12_13
Type: TC
Location: 15157 - 15645 (-)
Type: TC
Location: 15157 - 15645 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902490445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003920_12_8 | vegetarian > omnivore | 1.43269 | 0.04449 |
| MGYG000003920_12_8 | vegetarian > vegan | 2.14396 | 0.00969 |