Cluster: MGYG000003900_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003900
- CGC Family ID: CGCFAM_00389
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003900_97 | MGYG000003900_97_1 | 3 | 2018 | - | GH106 |
| NULL(UNKNOWN) | MGYG000003900_97 | MGYG000003900_97_2 | 2116 | 2265 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000003900_97 | MGYG000003900_97_3 | 2318 | 3151 | + | HTH_AraC |
| CAZyme | MGYG000003900_97 | MGYG000003900_97_4 | 3400 | 4839 | + | GH1 |
| TC | MGYG000003900_97 | MGYG000003900_97_5 | 4980 | 5516 | + | 4.A.1.2.6 |
Gene ID: MGYG000003900_97_1
Type: CAZyme
Location: 3 - 2018 (-)
Type: CAZyme
Location: 3 - 2018 (-)
Gene ID: MGYG000003900_97_2
Type:
Location: 2116 - 2265 (+)
Type:
Location: 2116 - 2265 (+)
Gene ID: MGYG000003900_97_3
Type: TF
Location: 2318 - 3151 (+)
Type: TF
Location: 2318 - 3151 (+)
Gene ID: MGYG000003900_97_4
Type: CAZyme
Location: 3400 - 4839 (+)
Type: CAZyme
Location: 3400 - 4839 (+)
Gene ID: MGYG000003900_97_5
Type: TC
Location: 4980 - 5516 (+)
Type: TC
Location: 4980 - 5516 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902490245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.