Cluster: MGYG000003873_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003873
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003873_56 | MGYG000003873_56_1 | 100 | 438 | - | 4.A.3.1.2 |
| TF | MGYG000003873_56 | MGYG000003873_56_2 | 653 | 1657 | - | LacI |
| TC | MGYG000003873_56 | MGYG000003873_56_3 | 2015 | 3790 | + | 4.A.3.1.1 |
| CAZyme | MGYG000003873_56 | MGYG000003873_56_4 | 3857 | 5296 | + | GH1 |
| TF | MGYG000003873_56 | MGYG000003873_56_5 | 5563 | 6573 | - | LacI |
| TC | MGYG000003873_56 | MGYG000003873_56_6 | 6850 | 8628 | + | 4.A.3.1.1 |
| CAZyme | MGYG000003873_56 | MGYG000003873_56_7 | 8704 | 10125 | + | GH1 |
Gene ID: MGYG000003873_56_1
Type: TC
Location: 100 - 438 (-)
Type: TC
Location: 100 - 438 (-)
Gene ID: MGYG000003873_56_2
Type: TF
Location: 653 - 1657 (-)
Type: TF
Location: 653 - 1657 (-)
Gene ID: MGYG000003873_56_3
Type: TC
Location: 2015 - 3790 (+)
Type: TC
Location: 2015 - 3790 (+)
Gene ID: MGYG000003873_56_4
Type: CAZyme
Location: 3857 - 5296 (+)
Type: CAZyme
Location: 3857 - 5296 (+)
Gene ID: MGYG000003873_56_5
Type: TF
Location: 5563 - 6573 (-)
Type: TF
Location: 5563 - 6573 (-)
Gene ID: MGYG000003873_56_6
Type: TC
Location: 6850 - 8628 (+)
Type: TC
Location: 6850 - 8628 (+)
Gene ID: MGYG000003873_56_7
Type: CAZyme
Location: 8704 - 10125 (+)
Type: CAZyme
Location: 8704 - 10125 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900553345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.