Cluster: MGYG000003870_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003870
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003870_53 | MGYG000003870_53_2 | 134 | 2401 | + | GT35 |
| TC | MGYG000003870_53 | MGYG000003870_53_3 | 2698 | 3897 | - | 3.A.1.1.22 |
| TC | MGYG000003870_53 | MGYG000003870_53_4 | 3966 | 4805 | - | 3.A.1.1.45 |
| TC | MGYG000003870_53 | MGYG000003870_53_5 | 4805 | 5659 | - | 3.A.1.1.45 |
| TC | MGYG000003870_53 | MGYG000003870_53_6 | 5747 | 7063 | - | 3.A.1.1.45 |
| TF | MGYG000003870_53 | MGYG000003870_53_7 | 7370 | 8089 | - | GntR |
| TC | MGYG000003870_53 | MGYG000003870_53_8 | 8319 | 10769 | + | 4.A.1.1.8 |
Gene ID: MGYG000003870_53_2
Type: CAZyme
Location: 134 - 2401 (+)
Type: CAZyme
Location: 134 - 2401 (+)
Gene ID: MGYG000003870_53_3
Type: TC
Location: 2698 - 3897 (-)
Type: TC
Location: 2698 - 3897 (-)
Gene ID: MGYG000003870_53_4
Type: TC
Location: 3966 - 4805 (-)
Type: TC
Location: 3966 - 4805 (-)
Gene ID: MGYG000003870_53_5
Type: TC
Location: 4805 - 5659 (-)
Type: TC
Location: 4805 - 5659 (-)
Gene ID: MGYG000003870_53_6
Type: TC
Location: 5747 - 7063 (-)
Type: TC
Location: 5747 - 7063 (-)
Gene ID: MGYG000003870_53_7
Type: TF
Location: 7370 - 8089 (-)
Type: TF
Location: 7370 - 8089 (-)
Gene ID: MGYG000003870_53_8
Type: TC
Location: 8319 - 10769 (+)
Type: TC
Location: 8319 - 10769 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902489965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.