Cluster: MGYG000003847_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003847
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003847_39 | MGYG000003847_39_3 | 2152 | 3552 | + | GH1 |
| TC | MGYG000003847_39 | MGYG000003847_39_4 | 3673 | 5016 | + | 4.A.3.2.9 |
| TC | MGYG000003847_39 | MGYG000003847_39_5 | 5179 | 5481 | + | 4.A.3.2.9 |
| TC | MGYG000003847_39 | MGYG000003847_39_6 | 5491 | 5823 | + | 4.A.3.2.3 |
| STP | MGYG000003847_39 | MGYG000003847_39_7 | 6065 | 7018 | + | Glucokinase |
| pfam | MGYG000003847_39 | MGYG000003847_39_8 | 7166 | 8089 | + | DHH | DHHA2 |
| TC | MGYG000003847_39 | MGYG000003847_39_9 | 8357 | 9715 | + | 2.A.33.1.1 |
Gene ID: MGYG000003847_39_3
Type: CAZyme
Location: 2152 - 3552 (+)
Type: CAZyme
Location: 2152 - 3552 (+)
Gene ID: MGYG000003847_39_4
Type: TC
Location: 3673 - 5016 (+)
Type: TC
Location: 3673 - 5016 (+)
Gene ID: MGYG000003847_39_5
Type: TC
Location: 5179 - 5481 (+)
Type: TC
Location: 5179 - 5481 (+)
Gene ID: MGYG000003847_39_6
Type: TC
Location: 5491 - 5823 (+)
Type: TC
Location: 5491 - 5823 (+)
Gene ID: MGYG000003847_39_7
Type: STP
Location: 6065 - 7018 (+)
Type: STP
Location: 6065 - 7018 (+)
Gene ID: MGYG000003847_39_8
Type: pfam
Location: 7166 - 8089 (+)
Type: pfam
Location: 7166 - 8089 (+)
Gene ID: MGYG000003847_39_9
Type: TC
Location: 8357 - 9715 (+)
Type: TC
Location: 8357 - 9715 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902489665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003847_39_5 | vegan > omnivore | 1.00748 | 0.00701 |