Cluster: MGYG000003769_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003769
- CGC Family ID: CGCFAM_00462
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003769_4 | MGYG000003769_4_5 | 4255 | 5085 | - | 3.D.1.8.1 |
| pfam | MGYG000003769_4 | MGYG000003769_4_6 | 5166 | 6203 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | MGYG000003769_4 | MGYG000003769_4_7 | 6931 | 7902 | - | GH179 |
| STP | MGYG000003769_4 | MGYG000003769_4_8 | 7895 | 8686 | - | Nitroreductase |
| CAZyme | MGYG000003769_4 | MGYG000003769_4_9 | 9060 | 10778 | - | CE12 |
| CAZyme | MGYG000003769_4 | MGYG000003769_4_10 | 11305 | 13467 | - | GH112 |
| CAZyme | MGYG000003769_4 | MGYG000003769_4_11 | 13527 | 14576 | - | GH105 |
| STP | MGYG000003769_4 | MGYG000003769_4_12 | 14652 | 16370 | - | SBP_bac_1 |
| TC | MGYG000003769_4 | MGYG000003769_4_13 | 16435 | 17355 | - | 3.A.1.1.29 |
| TC | MGYG000003769_4 | MGYG000003769_4_14 | 17369 | 18373 | - | 3.A.1.1.10 |
| TF | MGYG000003769_4 | MGYG000003769_4_15 | 18724 | 19662 | + | HTH_AraC | HTH_AraC |
| CAZyme | MGYG000003769_4 | MGYG000003769_4_16 | 19787 | 21817 | - | GH115 |
Gene ID: MGYG000003769_4_5
Type: TC
Location: 4255 - 5085 (-)
Type: TC
Location: 4255 - 5085 (-)
Gene ID: MGYG000003769_4_6
Type: pfam
Location: 5166 - 6203 (-)
Type: pfam
Location: 5166 - 6203 (-)
Gene ID: MGYG000003769_4_7
Type: CAZyme
Location: 6931 - 7902 (-)
Type: CAZyme
Location: 6931 - 7902 (-)
Gene ID: MGYG000003769_4_8
Type: STP
Location: 7895 - 8686 (-)
Type: STP
Location: 7895 - 8686 (-)
Gene ID: MGYG000003769_4_9
Type: CAZyme
Location: 9060 - 10778 (-)
Type: CAZyme
Location: 9060 - 10778 (-)
Gene ID: MGYG000003769_4_10
Type: CAZyme
Location: 11305 - 13467 (-)
Type: CAZyme
Location: 11305 - 13467 (-)
Gene ID: MGYG000003769_4_11
Type: CAZyme
Location: 13527 - 14576 (-)
Type: CAZyme
Location: 13527 - 14576 (-)
Gene ID: MGYG000003769_4_12
Type: STP
Location: 14652 - 16370 (-)
Type: STP
Location: 14652 - 16370 (-)
Gene ID: MGYG000003769_4_13
Type: TC
Location: 16435 - 17355 (-)
Type: TC
Location: 16435 - 17355 (-)
Gene ID: MGYG000003769_4_14
Type: TC
Location: 17369 - 18373 (-)
Type: TC
Location: 17369 - 18373 (-)
Gene ID: MGYG000003769_4_15
Type: TF
Location: 18724 - 19662 (+)
Type: TF
Location: 18724 - 19662 (+)
Gene ID: MGYG000003769_4_16
Type: CAZyme
Location: 19787 - 21817 (-)
Type: CAZyme
Location: 19787 - 21817 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Species
Lachnoclostridium sp905192625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.