Cluster: MGYG000003736_CGC7
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003736
- CGC Family ID: CGCFAM_10978
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003736_12 | MGYG000003736_12_3 | 2162 | 3181 | - | 2.A.80.1.3 |
| TF | MGYG000003736_12 | MGYG000003736_12_4 | 3312 | 4214 | + | HTH_1 |
| TC | MGYG000003736_12 | MGYG000003736_12_5 | 4325 | 5068 | - | 3.A.1.4.11 |
| TC | MGYG000003736_12 | MGYG000003736_12_6 | 5078 | 6931 | - | 3.A.1.4.11 |
| TC | MGYG000003736_12 | MGYG000003736_12_7 | 6935 | 7987 | - | 3.A.1.4.11 |
| TC | MGYG000003736_12 | MGYG000003736_12_8 | 8148 | 9305 | - | 3.A.1.4.11 |
| TC | MGYG000003736_12 | MGYG000003736_12_9 | 9643 | 10401 | - | 2.A.102.3.2 |
| NULL(UNKNOWN) | MGYG000003736_12 | MGYG000003736_12_10 | 10436 | 10951 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003736_12 | MGYG000003736_12_11 | 11275 | 12309 | - | 3.A.1.4.7 |
| TC | MGYG000003736_12 | MGYG000003736_12_12 | 12309 | 13193 | - | 3.A.1.4.3 |
| pfam | MGYG000003736_12 | MGYG000003736_12_13 | 13367 | 14575 | - | ANF_receptor | Peripla_BP_5 | Peripla_BP_6 |
| TC | MGYG000003736_12 | MGYG000003736_12_14 | 14675 | 15400 | - | 3.A.1.4.8 |
| TC | MGYG000003736_12 | MGYG000003736_12_15 | 15413 | 16186 | - | 3.A.1.4.10 |
| CAZyme | MGYG000003736_12 | MGYG000003736_12_16 | 16546 | 18213 | - | AA3_2 |
| peptidase | MGYG000003736_12 | MGYG000003736_12_17 | 18294 | 19214 | - | S33.UPW |
| TF | MGYG000003736_12 | MGYG000003736_12_18 | 19321 | 19740 | - | MerR |
| TC | MGYG000003736_12 | MGYG000003736_12_19 | 19737 | 22121 | - | 3.A.3.5.34 |
| STP | MGYG000003736_12 | MGYG000003736_12_20 | 22361 | 22561 | + | HMA |
| TC | MGYG000003736_12 | MGYG000003736_12_21 | 22626 | 23351 | - | 1.B.39.1.6 |
| pfam | MGYG000003736_12 | MGYG000003736_12_22 | 23640 | 24608 | - | Shikimate_DH | OCD_Mu_crystall |
| TC | MGYG000003736_12 | MGYG000003736_12_23 | 24693 | 25691 | - | 8.A.5.1.6 |
| CAZyme | MGYG000003736_12 | MGYG000003736_12_24 | 25752 | 27959 | - | GT51 |
Gene ID: MGYG000003736_12_3
Type: TC
Location: 2162 - 3181 (-)
Type: TC
Location: 2162 - 3181 (-)
Gene ID: MGYG000003736_12_4
Type: TF
Location: 3312 - 4214 (+)
Type: TF
Location: 3312 - 4214 (+)
Gene ID: MGYG000003736_12_5
Type: TC
Location: 4325 - 5068 (-)
Type: TC
Location: 4325 - 5068 (-)
Gene ID: MGYG000003736_12_6
Type: TC
Location: 5078 - 6931 (-)
Type: TC
Location: 5078 - 6931 (-)
Gene ID: MGYG000003736_12_7
Type: TC
Location: 6935 - 7987 (-)
Type: TC
Location: 6935 - 7987 (-)
Gene ID: MGYG000003736_12_8
Type: TC
Location: 8148 - 9305 (-)
Type: TC
Location: 8148 - 9305 (-)
Gene ID: MGYG000003736_12_9
Type: TC
Location: 9643 - 10401 (-)
Type: TC
Location: 9643 - 10401 (-)
Gene ID: MGYG000003736_12_10
Type:
Location: 10436 - 10951 (-)
Type:
Location: 10436 - 10951 (-)
Gene ID: MGYG000003736_12_11
Type: TC
Location: 11275 - 12309 (-)
Type: TC
Location: 11275 - 12309 (-)
Gene ID: MGYG000003736_12_12
Type: TC
Location: 12309 - 13193 (-)
Type: TC
Location: 12309 - 13193 (-)
Gene ID: MGYG000003736_12_13
Type: pfam
Location: 13367 - 14575 (-)
Type: pfam
Location: 13367 - 14575 (-)
Gene ID: MGYG000003736_12_14
Type: TC
Location: 14675 - 15400 (-)
Type: TC
Location: 14675 - 15400 (-)
Gene ID: MGYG000003736_12_15
Type: TC
Location: 15413 - 16186 (-)
Type: TC
Location: 15413 - 16186 (-)
Gene ID: MGYG000003736_12_16
Type: CAZyme
Location: 16546 - 18213 (-)
Type: CAZyme
Location: 16546 - 18213 (-)
Gene ID: MGYG000003736_12_17
Type: peptidase
Location: 18294 - 19214 (-)
Type: peptidase
Location: 18294 - 19214 (-)
Gene ID: MGYG000003736_12_18
Type: TF
Location: 19321 - 19740 (-)
Type: TF
Location: 19321 - 19740 (-)
Gene ID: MGYG000003736_12_19
Type: TC
Location: 19737 - 22121 (-)
Type: TC
Location: 19737 - 22121 (-)
Gene ID: MGYG000003736_12_20
Type: STP
Location: 22361 - 22561 (+)
Type: STP
Location: 22361 - 22561 (+)
Gene ID: MGYG000003736_12_21
Type: TC
Location: 22626 - 23351 (-)
Type: TC
Location: 22626 - 23351 (-)
Gene ID: MGYG000003736_12_22
Type: pfam
Location: 23640 - 24608 (-)
Type: pfam
Location: 23640 - 24608 (-)
Gene ID: MGYG000003736_12_23
Type: TC
Location: 24693 - 25691 (-)
Type: TC
Location: 24693 - 25691 (-)
Gene ID: MGYG000003736_12_24
Type: CAZyme
Location: 25752 - 27959 (-)
Type: CAZyme
Location: 25752 - 27959 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Cupriavidus
Species
Cupriavidus metallidurans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.