Cluster: MGYG000003733_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003733
- CGC Family ID: CGCFAM_10977
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003733_124 | MGYG000003733_124_10 | 11685 | 12647 | + | CE11 |
| TC | MGYG000003733_124 | MGYG000003733_124_11 | 12966 | 13874 | + | 1.B.33.1.4 |
| pfam | MGYG000003733_124 | MGYG000003733_124_12 | 13888 | 15558 | + | SMC_N | AAA_23 |
| pfam | MGYG000003733_124 | MGYG000003733_124_13 | 15566 | 17719 | + | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | HHH_2 |
| TC | MGYG000003733_124 | MGYG000003733_124_14 | 17790 | 19082 | - | 2.A.1.2.7 |
Gene ID: MGYG000003733_124_10
Type: CAZyme
Location: 11685 - 12647 (+)
Type: CAZyme
Location: 11685 - 12647 (+)
Gene ID: MGYG000003733_124_11
Type: TC
Location: 12966 - 13874 (+)
Type: TC
Location: 12966 - 13874 (+)
Gene ID: MGYG000003733_124_12
Type: pfam
Location: 13888 - 15558 (+)
Type: pfam
Location: 13888 - 15558 (+)
Gene ID: MGYG000003733_124_13
Type: pfam
Location: 15566 - 17719 (+)
Type: pfam
Location: 15566 - 17719 (+)
Gene ID: MGYG000003733_124_14
Type: TC
Location: 17790 - 19082 (-)
Type: TC
Location: 17790 - 19082 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Bradyrhizobium
Species
Bradyrhizobium sp003020075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.