Cluster: MGYG000003733_CGC10
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003733
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003733_19 | MGYG000003733_19_22 | 28326 | 29294 | - | 3.A.1.5.22 |
| TC | MGYG000003733_19 | MGYG000003733_19_23 | 29291 | 30277 | - | 3.A.1.5.37 |
| TC | MGYG000003733_19 | MGYG000003733_19_24 | 30274 | 31143 | - | 3.A.1.5.11 |
| TC | MGYG000003733_19 | MGYG000003733_19_25 | 31130 | 32080 | - | 3.A.1.5.39 |
| TC | MGYG000003733_19 | MGYG000003733_19_26 | 32087 | 33628 | - | 3.A.1.5.11 |
| pfam | MGYG000003733_19 | MGYG000003733_19_27 | 33746 | 34957 | - | CoA_transf_3 |
| CAZyme | MGYG000003733_19 | MGYG000003733_19_28 | 35128 | 36552 | + | GT5 |
| pfam | MGYG000003733_19 | MGYG000003733_19_29 | 36728 | 37786 | + | Methyltransf_2 | MTS | Methyltransf_11 | Methyltransf_12 | GCD14 | Methyltransf_23 | Methyltransf_24 | Methyltransf_25 | Methyltransf_31 | HTH_65 |
| peptidase | MGYG000003733_19 | MGYG000003733_19_30 | 37845 | 39470 | - | C82.UPA |
| TC | MGYG000003733_19 | MGYG000003733_19_31 | 39634 | 40872 | - | 2.A.1.2.71 |
| pfam | MGYG000003733_19 | MGYG000003733_19_32 | 40961 | 41476 | - | PRC |
| CAZyme | MGYG000003733_19 | MGYG000003733_19_33 | 41524 | 43725 | - | GH176 |
| TC | MGYG000003733_19 | MGYG000003733_19_34 | 43811 | 45574 | - | 3.A.1.210.9 |
| CAZyme | MGYG000003733_19 | MGYG000003733_19_35 | 45888 | 46955 | + | GT4 |
| pfam | MGYG000003733_19 | MGYG000003733_19_36 | 47257 | 48510 | + | ANF_receptor | Peripla_BP_5 | Peripla_BP_6 |
| TC | MGYG000003733_19 | MGYG000003733_19_37 | 48527 | 49396 | + | 3.A.1.4.10 |
| TC | MGYG000003733_19 | MGYG000003733_19_38 | 49396 | 50382 | + | 3.A.1.4.5 |
| TC | MGYG000003733_19 | MGYG000003733_19_39 | 50393 | 51142 | + | 3.A.1.4.8 |
| TC | MGYG000003733_19 | MGYG000003733_19_40 | 51135 | 51839 | + | 3.A.1.4.10 |
Gene ID: MGYG000003733_19_22
Type: TC
Location: 28326 - 29294 (-)
Type: TC
Location: 28326 - 29294 (-)
Gene ID: MGYG000003733_19_23
Type: TC
Location: 29291 - 30277 (-)
Type: TC
Location: 29291 - 30277 (-)
Gene ID: MGYG000003733_19_24
Type: TC
Location: 30274 - 31143 (-)
Type: TC
Location: 30274 - 31143 (-)
Gene ID: MGYG000003733_19_25
Type: TC
Location: 31130 - 32080 (-)
Type: TC
Location: 31130 - 32080 (-)
Gene ID: MGYG000003733_19_26
Type: TC
Location: 32087 - 33628 (-)
Type: TC
Location: 32087 - 33628 (-)
Gene ID: MGYG000003733_19_27
Type: pfam
Location: 33746 - 34957 (-)
Type: pfam
Location: 33746 - 34957 (-)
Gene ID: MGYG000003733_19_28
Type: CAZyme
Location: 35128 - 36552 (+)
Type: CAZyme
Location: 35128 - 36552 (+)
Gene ID: MGYG000003733_19_29
Type: pfam
Location: 36728 - 37786 (+)
Type: pfam
Location: 36728 - 37786 (+)
Gene ID: MGYG000003733_19_30
Type: peptidase
Location: 37845 - 39470 (-)
Type: peptidase
Location: 37845 - 39470 (-)
Gene ID: MGYG000003733_19_31
Type: TC
Location: 39634 - 40872 (-)
Type: TC
Location: 39634 - 40872 (-)
Gene ID: MGYG000003733_19_32
Type: pfam
Location: 40961 - 41476 (-)
Type: pfam
Location: 40961 - 41476 (-)
Gene ID: MGYG000003733_19_33
Type: CAZyme
Location: 41524 - 43725 (-)
Type: CAZyme
Location: 41524 - 43725 (-)
Gene ID: MGYG000003733_19_34
Type: TC
Location: 43811 - 45574 (-)
Type: TC
Location: 43811 - 45574 (-)
Gene ID: MGYG000003733_19_35
Type: CAZyme
Location: 45888 - 46955 (+)
Type: CAZyme
Location: 45888 - 46955 (+)
Gene ID: MGYG000003733_19_36
Type: pfam
Location: 47257 - 48510 (+)
Type: pfam
Location: 47257 - 48510 (+)
Gene ID: MGYG000003733_19_37
Type: TC
Location: 48527 - 49396 (+)
Type: TC
Location: 48527 - 49396 (+)
Gene ID: MGYG000003733_19_38
Type: TC
Location: 49396 - 50382 (+)
Type: TC
Location: 49396 - 50382 (+)
Gene ID: MGYG000003733_19_39
Type: TC
Location: 50393 - 51142 (+)
Type: TC
Location: 50393 - 51142 (+)
Gene ID: MGYG000003733_19_40
Type: TC
Location: 51135 - 51839 (+)
Type: TC
Location: 51135 - 51839 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Bradyrhizobium
Species
Bradyrhizobium sp003020075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.