Cluster: MGYG000003732_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003732
- CGC Family ID: CGCFAM_00182
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003732_19 | MGYG000003732_19_6 | 4980 | 6197 | - | GT4 |
| pfam | MGYG000003732_19 | MGYG000003732_19_7 | 6212 | 6976 | - | BcrAD_BadFG |
| pfam | MGYG000003732_19 | MGYG000003732_19_8 | 7132 | 8295 | - | HGD-D |
| TC | MGYG000003732_19 | MGYG000003732_19_9 | 8372 | 9157 | - | 3.A.1.5.36 |
| TC | MGYG000003732_19 | MGYG000003732_19_10 | 9144 | 10142 | - | 3.A.1.5.37 |
| TC | MGYG000003732_19 | MGYG000003732_19_11 | 10146 | 10976 | - | 3.A.1.5.39 |
| TC | MGYG000003732_19 | MGYG000003732_19_12 | 10973 | 11893 | - | 3.A.1.5.39 |
| TC | MGYG000003732_19 | MGYG000003732_19_13 | 12015 | 13625 | - | 3.A.1.5.11 |
| pfam | MGYG000003732_19 | MGYG000003732_19_14 | 13810 | 15093 | - | HGD-D |
| TC | MGYG000003732_19 | MGYG000003732_19_15 | 15523 | 16593 | - | 3.A.1.10.4 |
| TC | MGYG000003732_19 | MGYG000003732_19_16 | 16597 | 18039 | - | 3.A.1.8.1 |
Gene ID: MGYG000003732_19_6
Type: CAZyme
Location: 4980 - 6197 (-)
Type: CAZyme
Location: 4980 - 6197 (-)
Gene ID: MGYG000003732_19_7
Type: pfam
Location: 6212 - 6976 (-)
Type: pfam
Location: 6212 - 6976 (-)
Gene ID: MGYG000003732_19_8
Type: pfam
Location: 7132 - 8295 (-)
Type: pfam
Location: 7132 - 8295 (-)
Gene ID: MGYG000003732_19_9
Type: TC
Location: 8372 - 9157 (-)
Type: TC
Location: 8372 - 9157 (-)
Gene ID: MGYG000003732_19_10
Type: TC
Location: 9144 - 10142 (-)
Type: TC
Location: 9144 - 10142 (-)
Gene ID: MGYG000003732_19_11
Type: TC
Location: 10146 - 10976 (-)
Type: TC
Location: 10146 - 10976 (-)
Gene ID: MGYG000003732_19_12
Type: TC
Location: 10973 - 11893 (-)
Type: TC
Location: 10973 - 11893 (-)
Gene ID: MGYG000003732_19_13
Type: TC
Location: 12015 - 13625 (-)
Type: TC
Location: 12015 - 13625 (-)
Gene ID: MGYG000003732_19_14
Type: pfam
Location: 13810 - 15093 (-)
Type: pfam
Location: 13810 - 15093 (-)
Gene ID: MGYG000003732_19_15
Type: TC
Location: 15523 - 16593 (-)
Type: TC
Location: 15523 - 16593 (-)
Gene ID: MGYG000003732_19_16
Type: TC
Location: 16597 - 18039 (-)
Type: TC
Location: 16597 - 18039 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902488525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003732_19_6 | vegan > omnivore | 1.39902 | 0.00566 |
| MGYG000003732_19_9 | vegan > omnivore | 2.37430 | 0.00566 |
| MGYG000003732_19_11 | vegan > omnivore | 2.29086 | 0.00566 |
| MGYG000003732_19_11 | vegetarian > omnivore | 1.11218 | 0.02847 |
| MGYG000003732_19_12 | vegan > omnivore | 2.24297 | 0.00566 |
| MGYG000003732_19_12 | vegetarian > omnivore | 1.03363 | 0.02847 |
| MGYG000003732_19_13 | vegan > omnivore | 2.85381 | 0.00566 |