Cluster: MGYG000003711_CGC23
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003711
- CGC Family ID: CGCFAM_02221
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003711_43 | MGYG000003711_43_1 | 96 | 1409 | - | 2.A.1.7.10 |
| TF | MGYG000003711_43 | MGYG000003711_43_2 | 1470 | 2519 | - | LacI |
| CAZyme | MGYG000003711_43 | MGYG000003711_43_3 | 2616 | 5081 | - | GH92 |
| TC | MGYG000003711_43 | MGYG000003711_43_4 | 6141 | 9218 | + | 1.B.14.12.2 |
| STP | MGYG000003711_43 | MGYG000003711_43_5 | 9418 | 9612 | + | HMA |
| TF | MGYG000003711_43 | MGYG000003711_43_6 | 9693 | 10148 | - | MerR |
| TC | MGYG000003711_43 | MGYG000003711_43_7 | 10160 | 12661 | - | 3.A.3.5.20 |
| TC | MGYG000003711_43 | MGYG000003711_43_8 | 12835 | 15792 | - | 1.B.14.6.11 |
| TC | MGYG000003711_43 | MGYG000003711_43_9 | 16188 | 16925 | - | 9.B.158.1.1 |
Gene ID: MGYG000003711_43_1
Type: TC
Location: 96 - 1409 (-)
Type: TC
Location: 96 - 1409 (-)
Gene ID: MGYG000003711_43_2
Type: TF
Location: 1470 - 2519 (-)
Type: TF
Location: 1470 - 2519 (-)
Gene ID: MGYG000003711_43_3
Type: CAZyme
Location: 2616 - 5081 (-)
Type: CAZyme
Location: 2616 - 5081 (-)
Gene ID: MGYG000003711_43_4
Type: TC
Location: 6141 - 9218 (+)
Type: TC
Location: 6141 - 9218 (+)
Gene ID: MGYG000003711_43_5
Type: STP
Location: 9418 - 9612 (+)
Type: STP
Location: 9418 - 9612 (+)
Gene ID: MGYG000003711_43_6
Type: TF
Location: 9693 - 10148 (-)
Type: TF
Location: 9693 - 10148 (-)
Gene ID: MGYG000003711_43_7
Type: TC
Location: 10160 - 12661 (-)
Type: TC
Location: 10160 - 12661 (-)
Gene ID: MGYG000003711_43_8
Type: TC
Location: 12835 - 15792 (-)
Type: TC
Location: 12835 - 15792 (-)
Gene ID: MGYG000003711_43_9
Type: TC
Location: 16188 - 16925 (-)
Type: TC
Location: 16188 - 16925 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_AQ
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.