Cluster: MGYG000003711_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003711
- CGC Family ID: CGCFAM_03856
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003711_42 | MGYG000003711_42_1 | 351 | 1640 | + | 2.A.1.7.9 |
| TF | MGYG000003711_42 | MGYG000003711_42_2 | 1647 | 2747 | + | LacI |
| STP | MGYG000003711_42 | MGYG000003711_42_3 | 2755 | 3783 | + | SIS | SIS |
| CAZyme | MGYG000003711_42 | MGYG000003711_42_4 | 3783 | 4931 | + | CE9 |
| pfam | MGYG000003711_42 | MGYG000003711_42_5 | 4931 | 5998 | + | HGSNAT_cat |
| TC | MGYG000003711_42 | MGYG000003711_42_6 | 6263 | 9289 | + | 1.B.12.5.7 |
Gene ID: MGYG000003711_42_1
Type: TC
Location: 351 - 1640 (+)
Type: TC
Location: 351 - 1640 (+)
Gene ID: MGYG000003711_42_2
Type: TF
Location: 1647 - 2747 (+)
Type: TF
Location: 1647 - 2747 (+)
Gene ID: MGYG000003711_42_3
Type: STP
Location: 2755 - 3783 (+)
Type: STP
Location: 2755 - 3783 (+)
Gene ID: MGYG000003711_42_4
Type: CAZyme
Location: 3783 - 4931 (+)
Type: CAZyme
Location: 3783 - 4931 (+)
Gene ID: MGYG000003711_42_5
Type: pfam
Location: 4931 - 5998 (+)
Type: pfam
Location: 4931 - 5998 (+)
Gene ID: MGYG000003711_42_6
Type: TC
Location: 6263 - 9289 (+)
Type: TC
Location: 6263 - 9289 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_AQ
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.