Cluster: MGYG000003570_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003570
- CGC Family ID: CGCFAM_01006
- Continent: Oceania
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003570_21 | MGYG000003570_21_26 | 26361 | 27029 | - | 3.A.1.3.17 |
| TC | MGYG000003570_21 | MGYG000003570_21_27 | 27070 | 27846 | - | 3.A.1.3.27 |
| TC | MGYG000003570_21 | MGYG000003570_21_28 | 27971 | 29452 | + | 9.B.174.1.1 |
| pfam | MGYG000003570_21 | MGYG000003570_21_29 | 29457 | 30290 | + | Methyltrans_RNA |
| CAZyme | MGYG000003570_21 | MGYG000003570_21_30 | 30294 | 31031 | + | GT26 |
| TC | MGYG000003570_21 | MGYG000003570_21_31 | 31065 | 32177 | + | 3.A.23.1.1 |
Gene ID: MGYG000003570_21_26
Type: TC
Location: 26361 - 27029 (-)
Type: TC
Location: 26361 - 27029 (-)
Gene ID: MGYG000003570_21_27
Type: TC
Location: 27070 - 27846 (-)
Type: TC
Location: 27070 - 27846 (-)
Gene ID: MGYG000003570_21_28
Type: TC
Location: 27971 - 29452 (+)
Type: TC
Location: 27971 - 29452 (+)
Gene ID: MGYG000003570_21_29
Type: pfam
Location: 29457 - 30290 (+)
Type: pfam
Location: 29457 - 30290 (+)
Gene ID: MGYG000003570_21_30
Type: CAZyme
Location: 30294 - 31031 (+)
Type: CAZyme
Location: 30294 - 31031 (+)
Gene ID: MGYG000003570_21_31
Type: TC
Location: 31065 - 32177 (+)
Type: TC
Location: 31065 - 32177 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp900769985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.