Cluster: MGYG000003534_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003534
- CGC Family ID: CGCFAM_00614
- Continent: Oceania
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003534_117 | MGYG000003534_117_29 | 28347 | 29981 | - | 3.A.1.105.12 |
| CAZyme | MGYG000003534_117 | MGYG000003534_117_30 | 30037 | 31257 | + | GT104 |
| pfam | MGYG000003534_117 | MGYG000003534_117_31 | 31295 | 31861 | + | EFP | EFP_N | Elong-fact-P_C |
| TF | MGYG000003534_117 | MGYG000003534_117_32 | 31930 | 33348 | - | GntR |
| TC | MGYG000003534_117 | MGYG000003534_117_33 | 33416 | 36613 | + | 3.A.12.1.1 |
Gene ID: MGYG000003534_117_29
Type: TC
Location: 28347 - 29981 (-)
Type: TC
Location: 28347 - 29981 (-)
Gene ID: MGYG000003534_117_30
Type: CAZyme
Location: 30037 - 31257 (+)
Type: CAZyme
Location: 30037 - 31257 (+)
Gene ID: MGYG000003534_117_31
Type: pfam
Location: 31295 - 31861 (+)
Type: pfam
Location: 31295 - 31861 (+)
Gene ID: MGYG000003534_117_32
Type: TF
Location: 31930 - 33348 (-)
Type: TF
Location: 31930 - 33348 (-)
Gene ID: MGYG000003534_117_33
Type: TC
Location: 33416 - 36613 (+)
Type: TC
Location: 33416 - 36613 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp900769325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.