Cluster: MGYG000003462_CGC18
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000003462
- CGC Family ID: CGCFAM_00011
- Continent: Oceania
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003462_48 | MGYG000003462_48_49 | 60604 | 61566 | + | GT81 |
| CAZyme | MGYG000003462_48 | MGYG000003462_48_50 | 61573 | 62514 | + | GT2 |
| TC | MGYG000003462_48 | MGYG000003462_48_51 | 62526 | 64937 | + | 9.B.144.1.5 |
| pfam | MGYG000003462_48 | MGYG000003462_48_52 | 64987 | 65181 | + | Transposase_mut |
| NULL(UNKNOWN) | MGYG000003462_48 | MGYG000003462_48_53 | 65209 | 65367 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003462_48 | MGYG000003462_48_54 | 65484 | 66719 | - | GT4 |
| CAZyme | MGYG000003462_48 | MGYG000003462_48_55 | 66741 | 67799 | - | GT2 |
| CAZyme | MGYG000003462_48 | MGYG000003462_48_56 | 67808 | 68923 | - | GT2 |
| TC | MGYG000003462_48 | MGYG000003462_48_57 | 68925 | 69680 | - | 3.A.1.103.1 |
| TC | MGYG000003462_48 | MGYG000003462_48_58 | 69690 | 70502 | - | 3.A.1.103.4 |
| CAZyme | MGYG000003462_48 | MGYG000003462_48_59 | 70711 | 71847 | - | GT2 |
| CAZyme | MGYG000003462_48 | MGYG000003462_48_60 | 72063 | 74066 | + | GT2 |
Gene ID: MGYG000003462_48_49
Type: CAZyme
Location: 60604 - 61566 (+)
Type: CAZyme
Location: 60604 - 61566 (+)
Gene ID: MGYG000003462_48_50
Type: CAZyme
Location: 61573 - 62514 (+)
Type: CAZyme
Location: 61573 - 62514 (+)
Gene ID: MGYG000003462_48_51
Type: TC
Location: 62526 - 64937 (+)
Type: TC
Location: 62526 - 64937 (+)
Gene ID: MGYG000003462_48_52
Type: pfam
Location: 64987 - 65181 (+)
Type: pfam
Location: 64987 - 65181 (+)
Gene ID: MGYG000003462_48_53
Type:
Location: 65209 - 65367 (+)
Type:
Location: 65209 - 65367 (+)
Gene ID: MGYG000003462_48_54
Type: CAZyme
Location: 65484 - 66719 (-)
Type: CAZyme
Location: 65484 - 66719 (-)
Gene ID: MGYG000003462_48_55
Type: CAZyme
Location: 66741 - 67799 (-)
Type: CAZyme
Location: 66741 - 67799 (-)
Gene ID: MGYG000003462_48_56
Type: CAZyme
Location: 67808 - 68923 (-)
Type: CAZyme
Location: 67808 - 68923 (-)
Gene ID: MGYG000003462_48_57
Type: TC
Location: 68925 - 69680 (-)
Type: TC
Location: 68925 - 69680 (-)
Gene ID: MGYG000003462_48_58
Type: TC
Location: 69690 - 70502 (-)
Type: TC
Location: 69690 - 70502 (-)
Gene ID: MGYG000003462_48_59
Type: CAZyme
Location: 70711 - 71847 (-)
Type: CAZyme
Location: 70711 - 71847 (-)
Gene ID: MGYG000003462_48_60
Type: CAZyme
Location: 72063 - 74066 (+)
Type: CAZyme
Location: 72063 - 74066 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900767675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003462_48_54 | vegetarian > vegan | 3.60783 | 0.03063 |
| MGYG000003462_48_55 | vegetarian > vegan | 3.69974 | 0.03063 |
| MGYG000003462_48_56 | vegetarian > vegan | 2.77214 | 0.03063 |
| MGYG000003462_48_57 | vegetarian > vegan | 1.31737 | 0.03063 |
| MGYG000003462_48_58 | vegetarian > vegan | 2.92144 | 0.03063 |
| MGYG000003462_48_59 | vegetarian > vegan | 2.60485 | 0.03063 |