Cluster: MGYG000003452_CGC9
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003452
- CGC Family ID: CGCFAM_00002
- Continent: Oceania
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003452_4 | MGYG000003452_4_27 | 40540 | 42072 | + | 9.B.18.1.2 |
| CAZyme | MGYG000003452_4 | MGYG000003452_4_28 | 42136 | 43290 | + | GT4 |
| CAZyme | MGYG000003452_4 | MGYG000003452_4_29 | 43287 | 44645 | + | GT4 |
| CAZyme | MGYG000003452_4 | MGYG000003452_4_30 | 44647 | 45873 | + | GT4 |
| NULL(UNKNOWN) | MGYG000003452_4 | MGYG000003452_4_31 | 45954 | 47189 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000003452_4 | MGYG000003452_4_32 | 47278 | 48393 | + | PS_pyruv_trans |
| CAZyme | MGYG000003452_4 | MGYG000003452_4_33 | 48396 | 49457 | + | GT2 |
| CAZyme | MGYG000003452_4 | MGYG000003452_4_34 | 49420 | 50577 | + | GT2 |
| pfam | MGYG000003452_4 | MGYG000003452_4_35 | 50632 | 51714 | + | PS_pyruv_trans |
| TC | MGYG000003452_4 | MGYG000003452_4_36 | 51755 | 53173 | + | 2.A.66.2.20 |
Gene ID: MGYG000003452_4_27
Type: TC
Location: 40540 - 42072 (+)
Type: TC
Location: 40540 - 42072 (+)
Gene ID: MGYG000003452_4_28
Type: CAZyme
Location: 42136 - 43290 (+)
Type: CAZyme
Location: 42136 - 43290 (+)
Gene ID: MGYG000003452_4_29
Type: CAZyme
Location: 43287 - 44645 (+)
Type: CAZyme
Location: 43287 - 44645 (+)
Gene ID: MGYG000003452_4_30
Type: CAZyme
Location: 44647 - 45873 (+)
Type: CAZyme
Location: 44647 - 45873 (+)
Gene ID: MGYG000003452_4_31
Type:
Location: 45954 - 47189 (+)
Type:
Location: 45954 - 47189 (+)
Gene ID: MGYG000003452_4_32
Type: pfam
Location: 47278 - 48393 (+)
Type: pfam
Location: 47278 - 48393 (+)
Gene ID: MGYG000003452_4_33
Type: CAZyme
Location: 48396 - 49457 (+)
Type: CAZyme
Location: 48396 - 49457 (+)
Gene ID: MGYG000003452_4_34
Type: CAZyme
Location: 49420 - 50577 (+)
Type: CAZyme
Location: 49420 - 50577 (+)
Gene ID: MGYG000003452_4_35
Type: pfam
Location: 50632 - 51714 (+)
Type: pfam
Location: 50632 - 51714 (+)
Gene ID: MGYG000003452_4_36
Type: TC
Location: 51755 - 53173 (+)
Type: TC
Location: 51755 - 53173 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium ruminantium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003452_4_29 | vegetarian > omnivore | 1.00143 | 0.00683 |