Cluster: MGYG000003452_CGC5
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003452
- CGC Family ID: CGCFAM_03417
- Continent: Oceania
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003452_2 | MGYG000003452_2_245 | 310228 | 312942 | - | GH2 |
| TC | MGYG000003452_2 | MGYG000003452_2_246 | 313048 | 313944 | - | 3.A.1.1.18 |
| TC | MGYG000003452_2 | MGYG000003452_2_247 | 313941 | 314990 | - | 3.A.1.1.20 |
| STP | MGYG000003452_2 | MGYG000003452_2_248 | 315165 | 316538 | - | SBP_bac_1 |
| CAZyme | MGYG000003452_2 | MGYG000003452_2_249 | 317013 | 318383 | - | GH1 |
| pfam | MGYG000003452_2 | MGYG000003452_2_250 | 318499 | 319866 | - | AAA_14 | DUF4143 |
| CAZyme | MGYG000003452_2 | MGYG000003452_2_251 | 320325 | 321503 | + | CE2 |
| CAZyme | MGYG000003452_2 | MGYG000003452_2_252 | 321736 | 323553 | - | CE20 |
| pfam | MGYG000003452_2 | MGYG000003452_2_253 | 323694 | 324734 | - | KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N |
| pfam | MGYG000003452_2 | MGYG000003452_2_254 | 325092 | 326144 | - | KARI_C | 2-Hacid_dh_C | NAD_binding_2 | F420_oxidored | KARI_N |
| TC | MGYG000003452_2 | MGYG000003452_2_255 | 326430 | 327779 | - | 2.A.1.6.10 |
| TC | MGYG000003452_2 | MGYG000003452_2_256 | 328255 | 329907 | - | 2.A.1.2.93 |
| CAZyme | MGYG000003452_2 | MGYG000003452_2_257 | 330137 | 331651 | - | GH13_18 |
| TF | MGYG000003452_2 | MGYG000003452_2_258 | 332134 | 333219 | - | LacI |
| pfam | MGYG000003452_2 | MGYG000003452_2_259 | 333433 | 333819 | - | CRCB |
| TC | MGYG000003452_2 | MGYG000003452_2_260 | 333819 | 335327 | - | 1.A.43.3.1 |
| TC | MGYG000003452_2 | MGYG000003452_2_261 | 335699 | 337282 | - | 2.A.49.5.5 |
| pfam | MGYG000003452_2 | MGYG000003452_2_262 | 337345 | 338631 | - | Adenylsucc_synt |
| pfam | MGYG000003452_2 | MGYG000003452_2_263 | 338970 | 340145 | + | F_bP_aldolase |
| TC | MGYG000003452_2 | MGYG000003452_2_264 | 340153 | 341166 | - | 2.A.7.17.1 |
Gene ID: MGYG000003452_2_245
Type: CAZyme
Location: 310228 - 312942 (-)
Type: CAZyme
Location: 310228 - 312942 (-)
Gene ID: MGYG000003452_2_246
Type: TC
Location: 313048 - 313944 (-)
Type: TC
Location: 313048 - 313944 (-)
Gene ID: MGYG000003452_2_247
Type: TC
Location: 313941 - 314990 (-)
Type: TC
Location: 313941 - 314990 (-)
Gene ID: MGYG000003452_2_248
Type: STP
Location: 315165 - 316538 (-)
Type: STP
Location: 315165 - 316538 (-)
Gene ID: MGYG000003452_2_249
Type: CAZyme
Location: 317013 - 318383 (-)
Type: CAZyme
Location: 317013 - 318383 (-)
Gene ID: MGYG000003452_2_250
Type: pfam
Location: 318499 - 319866 (-)
Type: pfam
Location: 318499 - 319866 (-)
Gene ID: MGYG000003452_2_251
Type: CAZyme
Location: 320325 - 321503 (+)
Type: CAZyme
Location: 320325 - 321503 (+)
Gene ID: MGYG000003452_2_252
Type: CAZyme
Location: 321736 - 323553 (-)
Type: CAZyme
Location: 321736 - 323553 (-)
Gene ID: MGYG000003452_2_253
Type: pfam
Location: 323694 - 324734 (-)
Type: pfam
Location: 323694 - 324734 (-)
Gene ID: MGYG000003452_2_254
Type: pfam
Location: 325092 - 326144 (-)
Type: pfam
Location: 325092 - 326144 (-)
Gene ID: MGYG000003452_2_255
Type: TC
Location: 326430 - 327779 (-)
Type: TC
Location: 326430 - 327779 (-)
Gene ID: MGYG000003452_2_256
Type: TC
Location: 328255 - 329907 (-)
Type: TC
Location: 328255 - 329907 (-)
Gene ID: MGYG000003452_2_257
Type: CAZyme
Location: 330137 - 331651 (-)
Type: CAZyme
Location: 330137 - 331651 (-)
Gene ID: MGYG000003452_2_258
Type: TF
Location: 332134 - 333219 (-)
Type: TF
Location: 332134 - 333219 (-)
Gene ID: MGYG000003452_2_259
Type: pfam
Location: 333433 - 333819 (-)
Type: pfam
Location: 333433 - 333819 (-)
Gene ID: MGYG000003452_2_260
Type: TC
Location: 333819 - 335327 (-)
Type: TC
Location: 333819 - 335327 (-)
Gene ID: MGYG000003452_2_261
Type: TC
Location: 335699 - 337282 (-)
Type: TC
Location: 335699 - 337282 (-)
Gene ID: MGYG000003452_2_262
Type: pfam
Location: 337345 - 338631 (-)
Type: pfam
Location: 337345 - 338631 (-)
Gene ID: MGYG000003452_2_263
Type: pfam
Location: 338970 - 340145 (+)
Type: pfam
Location: 338970 - 340145 (+)
Gene ID: MGYG000003452_2_264
Type: TC
Location: 340153 - 341166 (-)
Type: TC
Location: 340153 - 341166 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium ruminantium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.