Cluster: MGYG000003403_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000003403
- CGC Family ID: CGCFAM_10452
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003403_5 | MGYG000003403_5_17 | 13975 | 16095 | - | CBM48 | GH13_11 |
| CAZyme | MGYG000003403_5 | MGYG000003403_5_18 | 16221 | 18794 | - | GH13_26 |
| CAZyme | MGYG000003403_5 | MGYG000003403_5_19 | 18791 | 20635 | - | GH77 |
| CAZyme | MGYG000003403_5 | MGYG000003403_5_20 | 20632 | 22350 | - | GH13_10 |
| CAZyme | MGYG000003403_5 | MGYG000003403_5_21 | 22347 | 24581 | - | CBM48 | GH13_9 |
| CAZyme | MGYG000003403_5 | MGYG000003403_5_22 | 24578 | 26104 | - | GT5 |
| STP | MGYG000003403_5 | MGYG000003403_5_23 | 26547 | 26975 | + | PAS |
| pfam | MGYG000003403_5 | MGYG000003403_5_24 | 26972 | 28501 | + | NAD_binding_1 | Flavodoxin_1 | FAD_binding_1 |
| TC | MGYG000003403_5 | MGYG000003403_5_25 | 28595 | 29263 | - | 3.A.1.6.8 |
| TC | MGYG000003403_5 | MGYG000003403_5_26 | 29253 | 29936 | - | 3.A.1.8.1 |
| TC | MGYG000003403_5 | MGYG000003403_5_27 | 29940 | 30683 | - | 3.A.1.8.1 |
Gene ID: MGYG000003403_5_17
Type: CAZyme
Location: 13975 - 16095 (-)
Type: CAZyme
Location: 13975 - 16095 (-)
Gene ID: MGYG000003403_5_18
Type: CAZyme
Location: 16221 - 18794 (-)
Type: CAZyme
Location: 16221 - 18794 (-)
Gene ID: MGYG000003403_5_19
Type: CAZyme
Location: 18791 - 20635 (-)
Type: CAZyme
Location: 18791 - 20635 (-)
Gene ID: MGYG000003403_5_20
Type: CAZyme
Location: 20632 - 22350 (-)
Type: CAZyme
Location: 20632 - 22350 (-)
Gene ID: MGYG000003403_5_21
Type: CAZyme
Location: 22347 - 24581 (-)
Type: CAZyme
Location: 22347 - 24581 (-)
Gene ID: MGYG000003403_5_22
Type: CAZyme
Location: 24578 - 26104 (-)
Type: CAZyme
Location: 24578 - 26104 (-)
Gene ID: MGYG000003403_5_23
Type: STP
Location: 26547 - 26975 (+)
Type: STP
Location: 26547 - 26975 (+)
Gene ID: MGYG000003403_5_24
Type: pfam
Location: 26972 - 28501 (+)
Type: pfam
Location: 26972 - 28501 (+)
Gene ID: MGYG000003403_5_25
Type: TC
Location: 28595 - 29263 (-)
Type: TC
Location: 28595 - 29263 (-)
Gene ID: MGYG000003403_5_26
Type: TC
Location: 29253 - 29936 (-)
Type: TC
Location: 29253 - 29936 (-)
Gene ID: MGYG000003403_5_27
Type: TC
Location: 29940 - 30683 (-)
Type: TC
Location: 29940 - 30683 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.