Cluster: MGYG000003403_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003403
- CGC Family ID: CGCFAM_05312
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003403_3 | MGYG000003403_3_88 | 94282 | 96024 | - | 9.B.34.1.1 |
| pfam | MGYG000003403_3 | MGYG000003403_3_89 | 96187 | 97212 | - | AI-2E_transport |
| TC | MGYG000003403_3 | MGYG000003403_3_90 | 97331 | 98383 | - | 9.B.34.1.2 |
| TF | MGYG000003403_3 | MGYG000003403_3_91 | 98529 | 99536 | - | LacI |
| pfam | MGYG000003403_3 | MGYG000003403_3_92 | 99632 | 100684 | + | AP_endonuc_2 |
| TC | MGYG000003403_3 | MGYG000003403_3_93 | 100712 | 101929 | + | 2.A.1.10.4 |
| CAZyme | MGYG000003403_3 | MGYG000003403_3_94 | 101942 | 103066 | + | GH179 |
Gene ID: MGYG000003403_3_88
Type: TC
Location: 94282 - 96024 (-)
Type: TC
Location: 94282 - 96024 (-)
Gene ID: MGYG000003403_3_89
Type: pfam
Location: 96187 - 97212 (-)
Type: pfam
Location: 96187 - 97212 (-)
Gene ID: MGYG000003403_3_90
Type: TC
Location: 97331 - 98383 (-)
Type: TC
Location: 97331 - 98383 (-)
Gene ID: MGYG000003403_3_91
Type: TF
Location: 98529 - 99536 (-)
Type: TF
Location: 98529 - 99536 (-)
Gene ID: MGYG000003403_3_92
Type: pfam
Location: 99632 - 100684 (+)
Type: pfam
Location: 99632 - 100684 (+)
Gene ID: MGYG000003403_3_93
Type: TC
Location: 100712 - 101929 (+)
Type: TC
Location: 100712 - 101929 (+)
Gene ID: MGYG000003403_3_94
Type: CAZyme
Location: 101942 - 103066 (+)
Type: CAZyme
Location: 101942 - 103066 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.