Cluster: MGYG000003403_CGC33
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003403
- CGC Family ID: CGCFAM_04101
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003403_25 | MGYG000003403_25_90 | 94886 | 95866 | - | 2.A.4.3.9 |
| pfam | MGYG000003403_25 | MGYG000003403_25_91 | 95883 | 96200 | + | Trns_repr_metal |
| pfam | MGYG000003403_25 | MGYG000003403_25_92 | 96298 | 96672 | - | MerC |
| TC | MGYG000003403_25 | MGYG000003403_25_93 | 96742 | 98067 | + | 9.B.10.1.1 |
| TC | MGYG000003403_25 | MGYG000003403_25_94 | 98201 | 99808 | - | 3.A.1.120.3 |
| TF | MGYG000003403_25 | MGYG000003403_25_95 | 100049 | 100948 | - | HTH_1 |
| peptidase | MGYG000003403_25 | MGYG000003403_25_96 | 101177 | 102355 | + | S12.950 |
| TC | MGYG000003403_25 | MGYG000003403_25_97 | 102352 | 103536 | + | 2.A.1.2.87 |
| STP | MGYG000003403_25 | MGYG000003403_25_98 | 103761 | 105377 | - | EAL |
| TC | MGYG000003403_25 | MGYG000003403_25_99 | 105607 | 106980 | + | 2.A.3.1.7 |
| CAZyme | MGYG000003403_25 | MGYG000003403_25_100 | 107196 | 107972 | + | GH23 |
Gene ID: MGYG000003403_25_90
Type: TC
Location: 94886 - 95866 (-)
Type: TC
Location: 94886 - 95866 (-)
Gene ID: MGYG000003403_25_91
Type: pfam
Location: 95883 - 96200 (+)
Type: pfam
Location: 95883 - 96200 (+)
Gene ID: MGYG000003403_25_92
Type: pfam
Location: 96298 - 96672 (-)
Type: pfam
Location: 96298 - 96672 (-)
Gene ID: MGYG000003403_25_93
Type: TC
Location: 96742 - 98067 (+)
Type: TC
Location: 96742 - 98067 (+)
Gene ID: MGYG000003403_25_94
Type: TC
Location: 98201 - 99808 (-)
Type: TC
Location: 98201 - 99808 (-)
Gene ID: MGYG000003403_25_95
Type: TF
Location: 100049 - 100948 (-)
Type: TF
Location: 100049 - 100948 (-)
Gene ID: MGYG000003403_25_96
Type: peptidase
Location: 101177 - 102355 (+)
Type: peptidase
Location: 101177 - 102355 (+)
Gene ID: MGYG000003403_25_97
Type: TC
Location: 102352 - 103536 (+)
Type: TC
Location: 102352 - 103536 (+)
Gene ID: MGYG000003403_25_98
Type: STP
Location: 103761 - 105377 (-)
Type: STP
Location: 103761 - 105377 (-)
Gene ID: MGYG000003403_25_99
Type: TC
Location: 105607 - 106980 (+)
Type: TC
Location: 105607 - 106980 (+)
Gene ID: MGYG000003403_25_100
Type: CAZyme
Location: 107196 - 107972 (+)
Type: CAZyme
Location: 107196 - 107972 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.