Cluster: MGYG000003403_CGC31
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003403
- CGC Family ID: CGCFAM_04102
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003403_24 | MGYG000003403_24_114 | 132893 | 133684 | - | 3.A.1.105.17 |
| TC | MGYG000003403_24 | MGYG000003403_24_115 | 133681 | 134649 | - | 3.A.1.105.17 |
| pfam | MGYG000003403_24 | MGYG000003403_24_116 | 134773 | 135483 | + | NAD_binding_1 | FAD_binding_6 |
| CAZyme | MGYG000003403_24 | MGYG000003403_24_117 | 135559 | 136719 | - | AA10 | CBM73 |
| CAZyme | MGYG000003403_24 | MGYG000003403_24_118 | 136880 | 138052 | - | AA10 | CBM73 |
| pfam | MGYG000003403_24 | MGYG000003403_24_119 | 138285 | 138770 | - | DUF1203 |
| TC | MGYG000003403_24 | MGYG000003403_24_120 | 138925 | 140127 | + | 9.B.34.1.4 |
| peptidase | MGYG000003403_24 | MGYG000003403_24_121 | 140196 | 141722 | + | S33.UPW |
| TC | MGYG000003403_24 | MGYG000003403_24_122 | 141719 | 142465 | + | 3.A.1.115.1 |
| TC | MGYG000003403_24 | MGYG000003403_24_123 | 142462 | 143646 | + | 3.A.1.115.2 |
Gene ID: MGYG000003403_24_114
Type: TC
Location: 132893 - 133684 (-)
Type: TC
Location: 132893 - 133684 (-)
Gene ID: MGYG000003403_24_115
Type: TC
Location: 133681 - 134649 (-)
Type: TC
Location: 133681 - 134649 (-)
Gene ID: MGYG000003403_24_116
Type: pfam
Location: 134773 - 135483 (+)
Type: pfam
Location: 134773 - 135483 (+)
Gene ID: MGYG000003403_24_117
Type: CAZyme
Location: 135559 - 136719 (-)
Type: CAZyme
Location: 135559 - 136719 (-)
Gene ID: MGYG000003403_24_118
Type: CAZyme
Location: 136880 - 138052 (-)
Type: CAZyme
Location: 136880 - 138052 (-)
Gene ID: MGYG000003403_24_119
Type: pfam
Location: 138285 - 138770 (-)
Type: pfam
Location: 138285 - 138770 (-)
Gene ID: MGYG000003403_24_120
Type: TC
Location: 138925 - 140127 (+)
Type: TC
Location: 138925 - 140127 (+)
Gene ID: MGYG000003403_24_121
Type: peptidase
Location: 140196 - 141722 (+)
Type: peptidase
Location: 140196 - 141722 (+)
Gene ID: MGYG000003403_24_122
Type: TC
Location: 141719 - 142465 (+)
Type: TC
Location: 141719 - 142465 (+)
Gene ID: MGYG000003403_24_123
Type: TC
Location: 142462 - 143646 (+)
Type: TC
Location: 142462 - 143646 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.