Cluster: MGYG000003403_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003403
- CGC Family ID: CGCFAM_01442
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003403_6 | MGYG000003403_6_1 | 584 | 3745 | - | 2.A.6.2.17 |
| TC | MGYG000003403_6 | MGYG000003403_6_2 | 3750 | 4880 | - | 2.A.6.2.27 |
| STP | MGYG000003403_6 | MGYG000003403_6_3 | 5000 | 5680 | + | TetR_N |
| pfam | MGYG000003403_6 | MGYG000003403_6_4 | 5817 | 6464 | + | RrnaAD | PCMT | CMAS | Methyltransf_11 | Methyltransf_25 |
| TC | MGYG000003403_6 | MGYG000003403_6_5 | 6481 | 7839 | + | 2.A.6.2.27 |
| NULL(UNKNOWN) | MGYG000003403_6 | MGYG000003403_6_6 | 7908 | 9125 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003403_6 | MGYG000003403_6_7 | 9341 | 10639 | - | GT30 |
Gene ID: MGYG000003403_6_1
Type: TC
Location: 584 - 3745 (-)
Type: TC
Location: 584 - 3745 (-)
Gene ID: MGYG000003403_6_2
Type: TC
Location: 3750 - 4880 (-)
Type: TC
Location: 3750 - 4880 (-)
Gene ID: MGYG000003403_6_3
Type: STP
Location: 5000 - 5680 (+)
Type: STP
Location: 5000 - 5680 (+)
Gene ID: MGYG000003403_6_4
Type: pfam
Location: 5817 - 6464 (+)
Type: pfam
Location: 5817 - 6464 (+)
Gene ID: MGYG000003403_6_5
Type: TC
Location: 6481 - 7839 (+)
Type: TC
Location: 6481 - 7839 (+)
Gene ID: MGYG000003403_6_6
Type:
Location: 7908 - 9125 (-)
Type:
Location: 7908 - 9125 (-)
Gene ID: MGYG000003403_6_7
Type: CAZyme
Location: 9341 - 10639 (-)
Type: CAZyme
Location: 9341 - 10639 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_AM
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.