Cluster: MGYG000003400_CGC42
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003400
- CGC Family ID: CGCFAM_03857
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003400_65 | MGYG000003400_65_5 | 3872 | 5857 | - | GH23 |
| pfam | MGYG000003400_65 | MGYG000003400_65_6 | 6055 | 6465 | + | ExbD |
| TC | MGYG000003400_65 | MGYG000003400_65_7 | 6736 | 9597 | + | 1.B.14.3.1 |
| TC | MGYG000003400_65 | MGYG000003400_65_8 | 9843 | 12005 | - | 1.B.14.1.1 |
| STP | MGYG000003400_65 | MGYG000003400_65_9 | 12182 | 12733 | - | Peptidase_M23 |
| TF | MGYG000003400_65 | MGYG000003400_65_10 | 12810 | 13292 | - | HTH_11 |
| TC | MGYG000003400_65 | MGYG000003400_65_11 | 13389 | 14234 | + | 2.A.7.3.6 |
Gene ID: MGYG000003400_65_5
Type: CAZyme
Location: 3872 - 5857 (-)
Type: CAZyme
Location: 3872 - 5857 (-)
Gene ID: MGYG000003400_65_6
Type: pfam
Location: 6055 - 6465 (+)
Type: pfam
Location: 6055 - 6465 (+)
Gene ID: MGYG000003400_65_7
Type: TC
Location: 6736 - 9597 (+)
Type: TC
Location: 6736 - 9597 (+)
Gene ID: MGYG000003400_65_8
Type: TC
Location: 9843 - 12005 (-)
Type: TC
Location: 9843 - 12005 (-)
Gene ID: MGYG000003400_65_9
Type: STP
Location: 12182 - 12733 (-)
Type: STP
Location: 12182 - 12733 (-)
Gene ID: MGYG000003400_65_10
Type: TF
Location: 12810 - 13292 (-)
Type: TF
Location: 12810 - 13292 (-)
Gene ID: MGYG000003400_65_11
Type: TC
Location: 13389 - 14234 (+)
Type: TC
Location: 13389 - 14234 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas sp003028475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.