Cluster: MGYG000003400_CGC32
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003400
- CGC Family ID: CGCFAM_02221
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003400_56 | MGYG000003400_56_82 | 98216 | 100834 | - | GH2 |
| pfam | MGYG000003400_56 | MGYG000003400_56_83 | 100925 | 102151 | - | GlcNAc_2-epim |
| STP | MGYG000003400_56 | MGYG000003400_56_84 | 102148 | 103143 | - | PfkB |
| TC | MGYG000003400_56 | MGYG000003400_56_85 | 103151 | 104464 | - | 2.A.1.7.10 |
| TF | MGYG000003400_56 | MGYG000003400_56_86 | 104525 | 105574 | - | LacI |
| CAZyme | MGYG000003400_56 | MGYG000003400_56_87 | 105671 | 108136 | - | GH92 |
| NULL(UNKNOWN) | MGYG000003400_56 | MGYG000003400_56_88 | 108411 | 109043 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003400_56 | MGYG000003400_56_89 | 109220 | 112297 | + | 1.B.14.12.2 |
| STP | MGYG000003400_56 | MGYG000003400_56_90 | 112517 | 112711 | + | HMA |
| TF | MGYG000003400_56 | MGYG000003400_56_91 | 112790 | 113245 | - | MerR |
| TC | MGYG000003400_56 | MGYG000003400_56_92 | 113257 | 115749 | - | 3.A.3.5.20 |
| TC | MGYG000003400_56 | MGYG000003400_56_93 | 115880 | 118837 | - | 1.B.14.6.11 |
| TC | MGYG000003400_56 | MGYG000003400_56_94 | 119174 | 119905 | - | 9.B.158.1.1 |
Gene ID: MGYG000003400_56_82
Type: CAZyme
Location: 98216 - 100834 (-)
Type: CAZyme
Location: 98216 - 100834 (-)
Gene ID: MGYG000003400_56_83
Type: pfam
Location: 100925 - 102151 (-)
Type: pfam
Location: 100925 - 102151 (-)
Gene ID: MGYG000003400_56_84
Type: STP
Location: 102148 - 103143 (-)
Type: STP
Location: 102148 - 103143 (-)
Gene ID: MGYG000003400_56_85
Type: TC
Location: 103151 - 104464 (-)
Type: TC
Location: 103151 - 104464 (-)
Gene ID: MGYG000003400_56_86
Type: TF
Location: 104525 - 105574 (-)
Type: TF
Location: 104525 - 105574 (-)
Gene ID: MGYG000003400_56_87
Type: CAZyme
Location: 105671 - 108136 (-)
Type: CAZyme
Location: 105671 - 108136 (-)
Gene ID: MGYG000003400_56_88
Type:
Location: 108411 - 109043 (+)
Type:
Location: 108411 - 109043 (+)
Gene ID: MGYG000003400_56_89
Type: TC
Location: 109220 - 112297 (+)
Type: TC
Location: 109220 - 112297 (+)
Gene ID: MGYG000003400_56_90
Type: STP
Location: 112517 - 112711 (+)
Type: STP
Location: 112517 - 112711 (+)
Gene ID: MGYG000003400_56_91
Type: TF
Location: 112790 - 113245 (-)
Type: TF
Location: 112790 - 113245 (-)
Gene ID: MGYG000003400_56_92
Type: TC
Location: 113257 - 115749 (-)
Type: TC
Location: 113257 - 115749 (-)
Gene ID: MGYG000003400_56_93
Type: TC
Location: 115880 - 118837 (-)
Type: TC
Location: 115880 - 118837 (-)
Gene ID: MGYG000003400_56_94
Type: TC
Location: 119174 - 119905 (-)
Type: TC
Location: 119174 - 119905 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas sp003028475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.