Cluster: MGYG000003400_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: beta-glucan
- Genome ID: MGYG000003400
- CGC Family ID: CGCFAM_00177
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003400_4 | MGYG000003400_4_66 | 74280 | 75944 | + | 3.A.1.120.6 |
| TC | MGYG000003400_4 | MGYG000003400_4_67 | 76090 | 77406 | + | 2.A.40.7.6 |
| CAZyme | MGYG000003400_4 | MGYG000003400_4_68 | 77467 | 78600 | - | GH8 |
| TC | MGYG000003400_4 | MGYG000003400_4_69 | 78584 | 82165 | - | 1.B.55.3.1 |
| TC | MGYG000003400_4 | MGYG000003400_4_70 | 82165 | 84543 | - | 4.D.3.1.6 |
| CAZyme | MGYG000003400_4 | MGYG000003400_4_71 | 84540 | 87164 | - | GT2 |
Gene ID: MGYG000003400_4_66
Type: TC
Location: 74280 - 75944 (+)
Type: TC
Location: 74280 - 75944 (+)
Gene ID: MGYG000003400_4_67
Type: TC
Location: 76090 - 77406 (+)
Type: TC
Location: 76090 - 77406 (+)
Gene ID: MGYG000003400_4_68
Type: CAZyme
Location: 77467 - 78600 (-)
Type: CAZyme
Location: 77467 - 78600 (-)
Gene ID: MGYG000003400_4_69
Type: TC
Location: 78584 - 82165 (-)
Type: TC
Location: 78584 - 82165 (-)
Gene ID: MGYG000003400_4_70
Type: TC
Location: 82165 - 84543 (-)
Type: TC
Location: 82165 - 84543 (-)
Gene ID: MGYG000003400_4_71
Type: CAZyme
Location: 84540 - 87164 (-)
Type: CAZyme
Location: 84540 - 87164 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas sp003028475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.