Cluster: MGYG000003400_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003400
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003400_30 | MGYG000003400_30_3 | 3977 | 5581 | + | GH144 |
| TC | MGYG000003400_30 | MGYG000003400_30_4 | 5550 | 6926 | + | 3.A.1.1.41 |
| TC | MGYG000003400_30 | MGYG000003400_30_5 | 6923 | 7804 | + | 3.A.1.1.20 |
| TC | MGYG000003400_30 | MGYG000003400_30_6 | 7801 | 8637 | + | 3.A.1.1.23 |
| CAZyme | MGYG000003400_30 | MGYG000003400_30_7 | 8634 | 11801 | + | CBM32 |
Gene ID: MGYG000003400_30_3
Type: CAZyme
Location: 3977 - 5581 (+)
Type: CAZyme
Location: 3977 - 5581 (+)
Gene ID: MGYG000003400_30_4
Type: TC
Location: 5550 - 6926 (+)
Type: TC
Location: 5550 - 6926 (+)
Gene ID: MGYG000003400_30_5
Type: TC
Location: 6923 - 7804 (+)
Type: TC
Location: 6923 - 7804 (+)
Gene ID: MGYG000003400_30_6
Type: TC
Location: 7801 - 8637 (+)
Type: TC
Location: 7801 - 8637 (+)
Gene ID: MGYG000003400_30_7
Type: CAZyme
Location: 8634 - 11801 (+)
Type: CAZyme
Location: 8634 - 11801 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas sp003028475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.