Cluster: MGYG000003399_CGC44
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003399
- CGC Family ID: CGCFAM_10949
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003399_25 | MGYG000003399_25_170 | 188422 | 189852 | - | GH1 |
| TC | MGYG000003399_25 | MGYG000003399_25_171 | 189869 | 191311 | - | 4.A.1.2.3 |
| TF | MGYG000003399_25 | MGYG000003399_25_172 | 191596 | 192618 | + | LacI |
| NULL(UNKNOWN) | MGYG000003399_25 | MGYG000003399_25_173 | 192643 | 193065 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003399_25 | MGYG000003399_25_174 | 193122 | 194084 | - | 9.B.10.1.1 |
| pfam | MGYG000003399_25 | MGYG000003399_25_175 | 194106 | 194309 | - | Sel_put |
| TC | MGYG000003399_25 | MGYG000003399_25_176 | 194528 | 196708 | - | 2.A.114.1.10 |
| pfam | MGYG000003399_25 | MGYG000003399_25_177 | 197094 | 198239 | + | Bac_luciferase |
| TF | MGYG000003399_25 | MGYG000003399_25_178 | 198244 | 199128 | - | HTH_1 |
| TC | MGYG000003399_25 | MGYG000003399_25_179 | 199156 | 199848 | - | 9.B.20.1.1 |
| TC | MGYG000003399_25 | MGYG000003399_25_180 | 199960 | 200739 | - | 3.A.1.16.2 |
| TC | MGYG000003399_25 | MGYG000003399_25_181 | 201325 | 202407 | - | 1.B.1.1.16 |
| TC | MGYG000003399_25 | MGYG000003399_25_182 | 202439 | 203230 | - | 3.A.1.17.1 |
| TC | MGYG000003399_25 | MGYG000003399_25_183 | 203247 | 204968 | - | 3.A.1.17.9 |
| CAZyme | MGYG000003399_25 | MGYG000003399_25_184 | 205451 | 206140 | - | GT20 |
Gene ID: MGYG000003399_25_170
Type: CAZyme
Location: 188422 - 189852 (-)
Type: CAZyme
Location: 188422 - 189852 (-)
Gene ID: MGYG000003399_25_171
Type: TC
Location: 189869 - 191311 (-)
Type: TC
Location: 189869 - 191311 (-)
Gene ID: MGYG000003399_25_172
Type: TF
Location: 191596 - 192618 (+)
Type: TF
Location: 191596 - 192618 (+)
Gene ID: MGYG000003399_25_173
Type:
Location: 192643 - 193065 (-)
Type:
Location: 192643 - 193065 (-)
Gene ID: MGYG000003399_25_174
Type: TC
Location: 193122 - 194084 (-)
Type: TC
Location: 193122 - 194084 (-)
Gene ID: MGYG000003399_25_175
Type: pfam
Location: 194106 - 194309 (-)
Type: pfam
Location: 194106 - 194309 (-)
Gene ID: MGYG000003399_25_176
Type: TC
Location: 194528 - 196708 (-)
Type: TC
Location: 194528 - 196708 (-)
Gene ID: MGYG000003399_25_177
Type: pfam
Location: 197094 - 198239 (+)
Type: pfam
Location: 197094 - 198239 (+)
Gene ID: MGYG000003399_25_178
Type: TF
Location: 198244 - 199128 (-)
Type: TF
Location: 198244 - 199128 (-)
Gene ID: MGYG000003399_25_179
Type: TC
Location: 199156 - 199848 (-)
Type: TC
Location: 199156 - 199848 (-)
Gene ID: MGYG000003399_25_180
Type: TC
Location: 199960 - 200739 (-)
Type: TC
Location: 199960 - 200739 (-)
Gene ID: MGYG000003399_25_181
Type: TC
Location: 201325 - 202407 (-)
Type: TC
Location: 201325 - 202407 (-)
Gene ID: MGYG000003399_25_182
Type: TC
Location: 202439 - 203230 (-)
Type: TC
Location: 202439 - 203230 (-)
Gene ID: MGYG000003399_25_183
Type: TC
Location: 203247 - 204968 (-)
Type: TC
Location: 203247 - 204968 (-)
Gene ID: MGYG000003399_25_184
Type: CAZyme
Location: 205451 - 206140 (-)
Type: CAZyme
Location: 205451 - 206140 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia ureilytica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.